Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q6P entry

There are 20 chains in PDB entry 7Q6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 27
A	ASP 29	GLY 75
A	LYS 77	THR 82
A	ALA 84	PHE 107
A	ASN 109	SER 114
A	GLN 116	HIS 169
B	MET 1	PHE 27
B	ASP 29	GLY 75
B	LYS 77	THR 82
B	ALA 84	PHE 107
B	ASN 109	SER 114
B	GLN 116	HIS 168
C	MET 1	PHE 27
C	ASP 29	THR 82
C	ALA 84	HIS 170
D	MET 1	PHE 27
D	ASP 29	GLY 75
D	LYS 77	THR 82
D	ALA 84	PHE 107
D	ASN 109	VAL 162

There are 14 helices in PDB entry 7Q6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	33	Right-handed alpha
Helix 2	AA2	A	71	75	Right-handed 310
Helix 3	AA3	A	105	109	Right-handed 310
Helix 4	AA4	A	129	138	Right-handed alpha
Helix 5	AA5	B	20	33	Right-handed alpha
Helix 6	AA6	B	105	109	Right-handed 310
Helix 7	AA7	B	129	138	Right-handed alpha
Helix 8	AA8	C	20	34	Right-handed alpha
Helix 9	AA9	C	129	137	Right-handed alpha
Helix 10	AB1	D	20	34	Right-handed alpha
Helix 11	AB2	D	71	75	Right-handed 310
Helix 12	AB3	D	90	94	Right-handed 310
Helix 13	AB4	D	105	109	Right-handed 310
Helix 14	AB5	D	129	137	Right-handed alpha

There are 12 sheets in PDB entry 7Q6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	156	167	anti-parallel
Strand 3	A	156	168	parallel
Strand 4	B	2	6	first strand
Strand 5	B	9	15	anti-parallel
Strand 6	B	122	128	anti-parallel
Strand 7	B	82	85	anti-parallel
Strand 8	B	98	101	anti-parallel
Strand 9	B	49	52	anti-parallel
Strand 10	B	43	45	anti-parallel

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There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	156	167	anti-parallel
Strand 3	A	39	45	first strand
Strand 4	A	49	52	anti-parallel
Strand 5	A	98	101	anti-parallel
Strand 6	A	82	85	anti-parallel
Strand 7	A	122	128	anti-parallel
Strand 8	A	9	15	anti-parallel
Strand 9	A	2	6	anti-parallel
Strand 10	A	156	168	anti-parallel
Strand 11	B	2	6	first strand
Strand 12	B	9	15	anti-parallel
Strand 13	B	122	128	anti-parallel
Strand 14	B	82	85	anti-parallel
Strand 15	B	98	101	anti-parallel
Strand 16	B	49	52	anti-parallel
Strand 17	B	43	45	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	60	61	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	147	151	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	60	61	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	147	151	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	9	15	anti-parallel
Strand 3	C	122	128	anti-parallel
Strand 4	C	82	85	anti-parallel
Strand 5	C	98	101	anti-parallel
Strand 6	C	49	52	anti-parallel
Strand 7	C	39	45	anti-parallel
Strand 8	C	156	162	anti-parallel
Strand 9	C	2	6	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	60	61	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	144	first strand
Strand 2	C	147	151	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	2	6	anti-parallel
Strand 4	D	9	15	anti-parallel
Strand 5	D	122	128	anti-parallel
Strand 6	D	82	85	anti-parallel
Strand 7	D	98	101	anti-parallel
Strand 8	D	49	52	anti-parallel
Strand 9	D	43	45	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	60	61	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	147	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q6P