Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q6R entry

There are 6 chains in PDB entry 7Q6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	TRP 407
B	ASP 12	TRP 407
C	PRO 10	TRP 407
D	ASP 12	TRP 407
E	VAL 14	TRP 407
F	ASP 12	TRP 407

There are115 helices in PDB entry 7Q6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	57	67	Right-handed alpha
Helix 3	AA3	A	72	77	Right-handed 310
Helix 4	AA4	A	92	96	Right-handed 310
Helix 5	AA5	A	99	110	Right-handed alpha
Helix 6	AA6	A	113	120	Right-handed alpha
Helix 7	AA7	A	120	139	Right-handed alpha
Helix 8	AA8	A	144	148	Right-handed alpha
Helix 9	AA9	A	150	162	Right-handed alpha
Helix 10	AB1	A	164	166	Right-handed 310
Helix 11	AB2	A	167	179	Right-handed alpha
Helix 12	AB3	A	185	206	Right-handed alpha
Helix 13	AB4	A	214	226	Right-handed alpha
Helix 14	AB5	A	230	263	Right-handed alpha
Helix 15	AB6	A	264	273	Right-handed alpha
Helix 16	AB7	A	276	288	Right-handed alpha
Helix 17	AB8	A	320	325	Right-handed alpha
Helix 18	AB9	A	351	355	Right-handed 310
Helix 19	AC1	A	358	377	Right-handed alpha
Helix 20	AC2	A	385	389	Right-handed 310
Helix 21	AC3	B	29	38	Right-handed alpha
Helix 22	AC4	B	57	67	Right-handed alpha
Helix 23	AC5	B	72	77	Right-handed 310
Helix 24	AC6	B	99	110	Right-handed alpha
Helix 25	AC7	B	113	119	Right-handed alpha
Helix 26	AC8	B	120	139	Right-handed alpha
Helix 27	AC9	B	144	148	Right-handed alpha
Helix 28	AD1	B	150	162	Right-handed alpha
Helix 29	AD2	B	164	166	Right-handed 310
Helix 30	AD3	B	167	179	Right-handed alpha
Helix 31	AD4	B	185	206	Right-handed alpha
Helix 32	AD5	B	214	225	Right-handed alpha
Helix 33	AD6	B	230	263	Right-handed alpha
Helix 34	AD7	B	264	273	Right-handed alpha
Helix 35	AD8	B	276	288	Right-handed alpha
Helix 36	AD9	B	320	325	Right-handed alpha
Helix 37	AE1	B	351	355	Right-handed 310
Helix 38	AE2	B	358	377	Right-handed alpha
Helix 39	AE3	B	385	389	Right-handed 310
Helix 40	AE4	C	29	38	Right-handed alpha
Helix 41	AE5	C	57	67	Right-handed alpha
Helix 42	AE6	C	72	77	Right-handed 310
Helix 43	AE7	C	92	96	Right-handed 310
Helix 44	AE8	C	99	109	Right-handed alpha
Helix 45	AE9	C	110	112	Right-handed 310
Helix 46	AF1	C	113	119	Right-handed alpha
Helix 47	AF2	C	120	139	Right-handed alpha
Helix 48	AF3	C	144	148	Right-handed alpha
Helix 49	AF4	C	150	162	Right-handed alpha
Helix 50	AF5	C	164	166	Right-handed 310
Helix 51	AF6	C	167	179	Right-handed alpha
Helix 52	AF7	C	185	206	Right-handed alpha
Helix 53	AF8	C	214	226	Right-handed alpha
Helix 54	AF9	C	230	263	Right-handed alpha
Helix 55	AG1	C	264	273	Right-handed alpha
Helix 56	AG2	C	276	288	Right-handed alpha
Helix 57	AG3	C	320	325	Right-handed alpha
Helix 58	AG4	C	358	377	Right-handed alpha
Helix 59	AG5	C	385	389	Right-handed 310
Helix 60	AG6	D	29	38	Right-handed alpha
Helix 61	AG7	D	57	66	Right-handed alpha
Helix 62	AG8	D	72	77	Right-handed 310
Helix 63	AG9	D	92	96	Right-handed 310
Helix 64	AH1	D	97	110	Right-handed alpha
Helix 65	AH2	D	113	119	Right-handed alpha
Helix 66	AH3	D	120	139	Right-handed alpha
Helix 67	AH4	D	144	148	Right-handed alpha
Helix 68	AH5	D	150	162	Right-handed alpha
Helix 69	AH6	D	164	166	Right-handed 310
Helix 70	AH7	D	167	179	Right-handed alpha
Helix 71	AH8	D	185	210	Right-handed alpha
Helix 72	AH9	D	214	222	Right-handed alpha
Helix 73	AI1	D	230	262	Right-handed alpha
Helix 74	AI2	D	264	273	Right-handed alpha
Helix 75	AI3	D	276	287	Right-handed alpha
Helix 76	AI4	D	320	325	Right-handed alpha
Helix 77	AI5	D	358	377	Right-handed alpha
Helix 78	AI6	D	385	389	Right-handed 310
Helix 79	AI7	E	29	37	Right-handed alpha
Helix 80	AI8	E	57	67	Right-handed alpha
Helix 81	AI9	E	72	76	Right-handed 310
Helix 82	AJ1	E	99	110	Right-handed alpha
Helix 83	AJ2	E	113	119	Right-handed alpha
Helix 84	AJ3	E	120	139	Right-handed alpha
Helix 85	AJ4	E	144	148	Right-handed alpha
Helix 86	AJ5	E	150	162	Right-handed alpha
Helix 87	AJ6	E	164	166	Right-handed 310
Helix 88	AJ7	E	167	179	Right-handed alpha
Helix 89	AJ8	E	185	206	Right-handed alpha
Helix 90	AJ9	E	214	223	Right-handed alpha
Helix 91	AK1	E	230	263	Right-handed alpha
Helix 92	AK2	E	263	273	Right-handed alpha
Helix 93	AK3	E	276	288	Right-handed alpha
Helix 94	AK4	E	320	325	Right-handed alpha
Helix 95	AK5	E	351	355	Right-handed 310
Helix 96	AK6	E	358	377	Right-handed alpha
Helix 97	AK7	E	385	389	Right-handed 310
Helix 98	AK8	F	29	38	Right-handed alpha
Helix 99	AK9	F	57	67	Right-handed alpha
Helix 100	AL1	F	72	77	Right-handed 310
Helix 101	AL2	F	99	109	Right-handed alpha
Helix 102	AL3	F	110	112	Right-handed 310
Helix 103	AL4	F	113	119	Right-handed alpha
Helix 104	AL5	F	120	137	Right-handed alpha
Helix 105	AL6	F	144	148	Right-handed alpha
Helix 106	AL7	F	150	162	Right-handed alpha
Helix 107	AL8	F	164	166	Right-handed 310
Helix 108	AL9	F	167	179	Right-handed alpha
Helix 109	AM1	F	185	206	Right-handed alpha
Helix 110	AM2	F	214	226	Right-handed alpha
Helix 111	AM3	F	230	263	Right-handed alpha
Helix 112	AM4	F	264	272	Right-handed alpha
Helix 113	AM5	F	276	288	Right-handed alpha
Helix 114	AM6	F	320	325	Right-handed alpha
Helix 115	AM7	F	358	377	Right-handed alpha

There are 19 sheets in PDB entry 7Q6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	316	319	parallel
Strand 4	A	298	300	anti-parallel
Strand 5	A	70	71	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	404	406	anti-parallel
Strand 3	A	381	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	310	311	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	316	319	parallel
Strand 4	B	298	300	anti-parallel
Strand 5	B	70	71	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	404	406	anti-parallel
Strand 3	B	381	382	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	310	311	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	52	55	anti-parallel
Strand 3	C	316	319	parallel
Strand 4	C	298	300	anti-parallel
Strand 5	C	70	71	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	404	406	anti-parallel
Strand 3	C	381	382	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	310	311	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	52	55	anti-parallel
Strand 3	D	316	319	parallel
Strand 4	D	298	300	anti-parallel
Strand 5	D	70	71	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	404	406	anti-parallel
Strand 3	D	381	382	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	310	311	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	43	first strand
Strand 2	E	52	55	anti-parallel
Strand 3	E	316	319	parallel
Strand 4	E	298	300	anti-parallel
Strand 5	E	70	71	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	404	406	anti-parallel
Strand 3	E	381	382	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	310	311	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	43	first strand
Strand 2	F	52	55	anti-parallel
Strand 3	F	316	319	parallel
Strand 4	F	298	300	anti-parallel
Strand 5	F	70	71	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	143	first strand
Strand 2	F	404	406	anti-parallel
Strand 3	F	381	382	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	305	first strand
Strand 2	F	310	311	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	390	391	first strand
Strand 2	F	400	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q6R