Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q6Y entry

There are 2 chains in PDB entry 7Q6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 490
B
 MET 1LYS 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7Q6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
92 101Right-handed alpha
Helix 3
AA3
A
142 158Right-handed alpha
Helix 4
AA4
A
175 187Right-handed alpha
Helix 5
AA5
A
190 192Right-handed 310
Helix 6
AA6
A
193 200Right-handed alpha
Helix 7
AA7
A
220 222Right-handed 310
Helix 8
AA8
A
223 233Right-handed alpha
Helix 9
AA9
A
260 281Right-handed alpha
Helix 10
AB1
A
299 326Right-handed alpha
Helix 11
AB2
A
332 339Right-handed 310
Helix 12
AB3
A
353 362Right-handed alpha
Helix 13
AB4
A
377 383Right-handed alpha
Helix 14
AB5
A
394 400Right-handed alpha
Helix 15
AB6
A
409 415Right-handed alpha
Helix 16
AB7
A
416 421Right-handed 310
Helix 17
AB8
A
444 457Right-handed alpha
Helix 18
AB9
A
476 490Right-handed alpha
Helix 19
AC1
B
49 53Right-handed 310
Helix 20
AC2
B
92 101Right-handed alpha
Helix 21
AC3
B
142 158Right-handed alpha
Helix 22
AC4
B
165 167Right-handed 310
Helix 23
AC5
B
175 187Right-handed alpha
Helix 24
AC6
B
190 192Right-handed 310
Helix 25
AC7
B
193 200Right-handed alpha
Helix 26
AC8
B
220 222Right-handed 310
Helix 27
AC9
B
223 233Right-handed alpha
Helix 28
AD1
B
260 281Right-handed alpha
Helix 29
AD2
B
299 318Right-handed alpha
Helix 30
AD3
B
335 339Right-handed 310
Helix 31
AD4
B
353 362Right-handed alpha
Helix 32
AD5
B
377 383Right-handed alpha
Helix 33
AD6
B
394 400Right-handed alpha
Helix 34
AD7
B
409 416Right-handed alpha
Helix 35
AD8
B
417 422Right-handed 310
Helix 36
AD9
B
444 457Right-handed alpha
Helix 37
AE1
B
476 489Right-handed alpha
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There are 7 sheets in PDB entry 7Q6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
19 30anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
65 69parallel
Strand 6
A
165 174parallel
Strand 7
A
211 215parallel
Strand 8
A
430 434parallel
Strand 9
A
460 464parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 245first strand
Strand 2
A
250 258anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
348 352anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 16first strand
Strand 2
B
19 30anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
103 107anti-parallel
Strand 5
B
66 69parallel
Strand 6
B
169 172parallel
Strand 7
B
211 215parallel
Strand 8
B
430 434parallel
Strand 9
B
460 464parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 244first strand
Strand 2
B
251 258anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
290 291anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 344first strand
Strand 2
B
349 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il