Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q83 entry

There are 4 chains in PDB entry 7Q83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 76ASN 250
B
 ALA 4ILE 226
C
 ASN 76ASN 250
D
 PRO 6ILE 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7Q83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 94Right-handed alpha
Helix 2
AA2
A
130 132Right-handed 310
Helix 3
AA3
A
173 175Right-handed 310
Helix 4
AA4
A
202 221Right-handed alpha
Helix 5
AA5
A
232 237Right-handed 310
Helix 6
AA6
A
239 247Right-handed alpha
Helix 7
AA7
B
35 70Right-handed alpha
Helix 8
AA8
B
73 109Right-handed alpha
Helix 9
AA9
B
112 149Right-handed alpha
Helix 10
AB1
B
198 223Right-handed alpha
Helix 11
AB2
C
77 94Right-handed alpha
Helix 12
AB3
C
130 132Right-handed 310
Helix 13
AB4
C
173 175Right-handed 310
Helix 14
AB5
C
202 221Right-handed alpha
Helix 15
AB6
C
232 237Right-handed 310
Helix 16
AB7
C
239 247Right-handed alpha
Helix 17
AB8
D
34 70Right-handed alpha
Helix 18
AB9
D
73 109Right-handed alpha
Helix 19
AC1
D
112 146Right-handed alpha
Helix 20
AC2
D
197 223Right-handed alpha
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There are 4 sheets in PDB entry 7Q83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 117first strand
Strand 2
A
134 144anti-parallel
Strand 3
A
147 158anti-parallel
Strand 4
A
164 171anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
177 180anti-parallel
Strand 4
A
227 229parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 117first strand
Strand 2
C
134 144anti-parallel
Strand 3
C
147 158anti-parallel
Strand 4
C
164 171anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 199first strand
Strand 2
C
187 191anti-parallel
Strand 3
C
177 180anti-parallel
Strand 4
C
227 229parallel
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