Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q84 entry

There are 6 chains in PDB entry 7Q84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 198
A
 TYR 200VAL 448
A
 GLY 450SER 655
B
 MET 1LYS 198
B
 TYR 200VAL 448
B
 GLY 450SER 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 7Q84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
15 25Right-handed alpha
Helix 3
AA3
A
26 42Right-handed alpha
Helix 4
AA4
A
43 47Right-handed 310
Helix 5
AA5
A
50 54Right-handed 310
Helix 6
AA6
A
55 77Right-handed alpha
Helix 7
AA7
A
81 94Right-handed alpha
Helix 8
AA8
A
100 106Right-handed alpha
Helix 9
AA9
A
106 115Right-handed alpha
Helix 10
AB1
A
116 129Right-handed alpha
Helix 11
AB2
A
146 150Right-handed 310
Helix 12
AB3
A
250 252Right-handed 310
Helix 13
AB4
A
279 307Right-handed alpha
Helix 14
AB5
A
320 323Right-handed 310
Helix 15
AB6
A
324 356Right-handed alpha
Helix 16
AB7
A
366 396Right-handed alpha
Helix 17
AB8
A
396 402Right-handed alpha
Helix 18
AB9
A
403 405Right-handed 310
Helix 19
AC1
A
406 415Right-handed alpha
Helix 20
AC2
A
416 419Right-handed 310
Helix 21
AC3
A
423 444Right-handed alpha
Helix 22
AC4
A
449 458Right-handed 310
Helix 23
AC5
A
479 510Right-handed alpha
Helix 24
AC6
A
511 518Right-handed alpha
Helix 25
AC7
A
519 544Right-handed alpha
Helix 26
AC8
A
548 570Right-handed alpha
Helix 27
AC9
A
571 576Right-handed alpha
Helix 28
AD1
A
577 579Right-handed 310
Helix 29
AD2
A
581 601Right-handed alpha
Helix 30
AD3
A
602 609Right-handed alpha
Helix 31
AD4
A
613 618Right-handed alpha
Helix 32
AD5
A
627 639Right-handed alpha
Helix 33
AD6
A
640 643Right-handed 310
Helix 34
AD7
B
2 11Right-handed alpha
Helix 35
AD8
B
15 25Right-handed alpha
Helix 36
AD9
B
26 42Right-handed alpha
Helix 37
AE1
B
43 47Right-handed 310
Helix 38
AE2
B
50 54Right-handed 310
Helix 39
AE3
B
55 77Right-handed alpha
Helix 40
AE4
B
81 94Right-handed alpha
Helix 41
AE5
B
100 106Right-handed alpha
Helix 42
AE6
B
106 115Right-handed alpha
Helix 43
AE7
B
116 129Right-handed alpha
Helix 44
AE8
B
146 150Right-handed 310
Helix 45
AE9
B
250 252Right-handed 310
Helix 46
AF1
B
279 307Right-handed alpha
Helix 47
AF2
B
320 323Right-handed 310
Helix 48
AF3
B
324 356Right-handed alpha
Helix 49
AF4
B
366 396Right-handed alpha
Helix 50
AF5
B
397 402Right-handed alpha
Helix 51
AF6
B
403 405Right-handed 310
Helix 52
AF7
B
406 415Right-handed alpha
Helix 53
AF8
B
416 419Right-handed 310
Helix 54
AF9
B
423 444Right-handed alpha
Helix 55
AG1
B
449 458Right-handed 310
Helix 56
AG2
B
479 510Right-handed alpha
Helix 57
AG3
B
511 519Right-handed alpha
Helix 58
AG4
B
519 544Right-handed alpha
Helix 59
AG5
B
548 570Right-handed alpha
Helix 60
AG6
B
570 576Right-handed alpha
Helix 61
AG7
B
577 579Right-handed 310
Helix 62
AG8
B
581 601Right-handed alpha
Helix 63
AG9
B
602 609Right-handed alpha
Helix 64
AH1
B
613 618Right-handed alpha
Helix 65
AH2
B
627 638Right-handed alpha
Helix 66
AH3
B
639 644Right-handed 310
Helix 67
AH4
B
647 653Right-handed 310
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There are 8 sheets in PDB entry 7Q84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
186 195parallel
Strand 3
A
198 208anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
186 195parallel
Strand 3
A
153 157parallel
Strand 4
A
162 166anti-parallel
Strand 5
A
245 248anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
221 225anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
265 266anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
186 195parallel
Strand 3
B
198 208anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
186 195parallel
Strand 3
B
153 157parallel
Strand 4
B
162 166anti-parallel
Strand 5
B
245 248anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
238 242anti-parallel
Strand 3
B
221 225anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il