Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q8C entry

There are 5 chains in PDB entry 7Q8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PHE 375
B	SER 6	PHE 375
C	SER 6	PHE 375
D	SER 6	PHE 375
E	SER 6	PHE 375

There are105 helices in PDB entry 7Q8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	112	126	Right-handed alpha
Helix 4	AA4	A	137	146	Right-handed alpha
Helix 5	AA5	A	172	175	Right-handed 310
Helix 6	AA6	A	181	193	Right-handed alpha
Helix 7	AA7	A	194	197	Right-handed 310
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	234	Right-handed alpha
Helix 10	AB1	A	251	256	Right-handed alpha
Helix 11	AB2	A	257	261	Right-handed 310
Helix 12	AB3	A	262	267	Right-handed 310
Helix 13	AB4	A	273	283	Right-handed alpha
Helix 14	AB5	A	289	295	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	308	319	Right-handed alpha
Helix 17	AB8	A	334	336	Right-handed 310
Helix 18	AB9	A	337	348	Right-handed alpha
Helix 19	AC1	A	349	355	Right-handed 310
Helix 20	AC2	A	359	366	Right-handed alpha
Helix 21	AC3	A	368	373	Right-handed alpha
Helix 22	AC4	B	55	61	Right-handed alpha
Helix 23	AC5	B	78	92	Right-handed alpha
Helix 24	AC6	B	112	126	Right-handed alpha
Helix 25	AC7	B	137	146	Right-handed alpha
Helix 26	AC8	B	172	175	Right-handed 310
Helix 27	AC9	B	181	193	Right-handed alpha
Helix 28	AD1	B	194	197	Right-handed 310
Helix 29	AD2	B	202	217	Right-handed alpha
Helix 30	AD3	B	222	234	Right-handed alpha
Helix 31	AD4	B	251	256	Right-handed alpha
Helix 32	AD5	B	257	261	Right-handed 310
Helix 33	AD6	B	262	267	Right-handed 310
Helix 34	AD7	B	273	283	Right-handed alpha
Helix 35	AD8	B	289	295	Right-handed alpha
Helix 36	AD9	B	301	305	Right-handed 310
Helix 37	AE1	B	308	319	Right-handed alpha
Helix 38	AE2	B	334	336	Right-handed 310
Helix 39	AE3	B	337	348	Right-handed alpha
Helix 40	AE4	B	349	355	Right-handed 310
Helix 41	AE5	B	359	366	Right-handed alpha
Helix 42	AE6	B	368	373	Right-handed alpha
Helix 43	AE7	C	55	61	Right-handed alpha
Helix 44	AE8	C	78	92	Right-handed alpha
Helix 45	AE9	C	112	126	Right-handed alpha
Helix 46	AF1	C	137	146	Right-handed alpha
Helix 47	AF2	C	172	175	Right-handed 310
Helix 48	AF3	C	181	193	Right-handed alpha
Helix 49	AF4	C	194	197	Right-handed 310
Helix 50	AF5	C	202	217	Right-handed alpha
Helix 51	AF6	C	222	234	Right-handed alpha
Helix 52	AF7	C	251	256	Right-handed alpha
Helix 53	AF8	C	257	261	Right-handed 310
Helix 54	AF9	C	262	267	Right-handed 310
Helix 55	AG1	C	273	283	Right-handed alpha
Helix 56	AG2	C	289	295	Right-handed alpha
Helix 57	AG3	C	301	305	Right-handed 310
Helix 58	AG4	C	308	319	Right-handed alpha
Helix 59	AG5	C	334	336	Right-handed 310
Helix 60	AG6	C	337	348	Right-handed alpha
Helix 61	AG7	C	349	355	Right-handed 310
Helix 62	AG8	C	359	366	Right-handed alpha
Helix 63	AG9	C	368	373	Right-handed alpha
Helix 64	AH1	D	55	61	Right-handed alpha
Helix 65	AH2	D	78	92	Right-handed alpha
Helix 66	AH3	D	112	126	Right-handed alpha
Helix 67	AH4	D	137	146	Right-handed alpha
Helix 68	AH5	D	172	175	Right-handed 310
Helix 69	AH6	D	181	193	Right-handed alpha
Helix 70	AH7	D	194	197	Right-handed 310
Helix 71	AH8	D	202	217	Right-handed alpha
Helix 72	AH9	D	222	234	Right-handed alpha
Helix 73	AI1	D	251	256	Right-handed alpha
Helix 74	AI2	D	257	261	Right-handed 310
Helix 75	AI3	D	262	267	Right-handed 310
Helix 76	AI4	D	273	283	Right-handed alpha
Helix 77	AI5	D	289	295	Right-handed alpha
Helix 78	AI6	D	301	305	Right-handed 310
Helix 79	AI7	D	308	319	Right-handed alpha
Helix 80	AI8	D	334	336	Right-handed 310
Helix 81	AI9	D	337	348	Right-handed alpha
Helix 82	AJ1	D	349	355	Right-handed 310
Helix 83	AJ2	D	359	366	Right-handed alpha
Helix 84	AJ3	D	368	373	Right-handed alpha
Helix 85	AJ4	E	55	61	Right-handed alpha
Helix 86	AJ5	E	78	92	Right-handed alpha
Helix 87	AJ6	E	112	126	Right-handed alpha
Helix 88	AJ7	E	137	146	Right-handed alpha
Helix 89	AJ8	E	172	175	Right-handed 310
Helix 90	AJ9	E	181	193	Right-handed alpha
Helix 91	AK1	E	194	197	Right-handed 310
Helix 92	AK2	E	202	217	Right-handed alpha
Helix 93	AK3	E	222	234	Right-handed alpha
Helix 94	AK4	E	251	256	Right-handed alpha
Helix 95	AK5	E	257	261	Right-handed 310
Helix 96	AK6	E	262	267	Right-handed 310
Helix 97	AK7	E	273	283	Right-handed alpha
Helix 98	AK8	E	289	295	Right-handed alpha
Helix 99	AK9	E	301	305	Right-handed 310
Helix 100	AL1	E	308	319	Right-handed alpha
Helix 101	AL2	E	334	336	Right-handed 310
Helix 102	AL3	E	337	348	Right-handed alpha
Helix 103	AL4	E	349	355	Right-handed 310
Helix 104	AL5	E	359	366	Right-handed alpha
Helix 105	AL6	E	368	373	Right-handed alpha

There are 30 sheets in PDB entry 7Q8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	177	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	246	249	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	177	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	246	249	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	177	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	246	249	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	177	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	246	249	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	177	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	240	first strand
Strand 2	E	246	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q8C