Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q94 entry

There are 4 chains in PDB entry 7Q94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ARG 288
B
 ALA 8ARG 288
C
 T 1 T 31
D
 A 1 A 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7Q94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 55Right-handed alpha
Helix 2
AA2
A
109 113Right-handed alpha
Helix 3
AA3
A
114 117Right-handed 310
Helix 4
AA4
A
124 139Right-handed alpha
Helix 5
AA5
A
140 154Right-handed alpha
Helix 6
AA6
A
166 177Right-handed alpha
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
198 215Right-handed alpha
Helix 9
AA9
A
229 242Right-handed alpha
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
281 288Right-handed alpha
Helix 12
AB3
B
44 57Right-handed alpha
Helix 13
AB4
B
109 113Right-handed alpha
Helix 14
AB5
B
114 117Right-handed 310
Helix 15
AB6
B
124 138Right-handed alpha
Helix 16
AB7
B
140 154Right-handed alpha
Helix 17
AB8
B
166 178Right-handed alpha
Helix 18
AB9
B
198 215Right-handed alpha
Helix 19
AC1
B
229 242Right-handed alpha
Helix 20
AC2
B
246 258Right-handed alpha
Helix 21
AC3
B
281 286Right-handed alpha
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There are 6 sheets in PDB entry 7Q94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
10 17anti-parallel
Strand 3
A
85 92parallel
Strand 4
A
64 71anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
10 17anti-parallel
Strand 3
A
22 25anti-parallel
Strand 4
A
106 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 266first strand
Strand 2
A
276 280anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
9 17anti-parallel
Strand 3
B
85 92parallel
Strand 4
B
65 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
9 17anti-parallel
Strand 3
B
22 25anti-parallel
Strand 4
B
106 108anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 268first strand
Strand 2
B
274 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il