Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q9Y entry

There are 8 chains in PDB entry 7Q9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	ILE 286
B	THR 8	ILE 286
C	THR 8	ILE 286
D	THR 8	ILE 286
E	THR 8	ILE 286
F	THR 8	ILE 286
G	THR 8	ILE 286
H	THR 8	ILE 286

There are 40 helices in PDB entry 7Q9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	18	Right-handed 310
Helix 2	AA2	A	92	96	Right-handed 310
Helix 3	AA3	A	202	207	Right-handed 310
Helix 4	AA4	A	209	213	Right-handed 310
Helix 5	AA5	A	214	219	Right-handed alpha
Helix 6	AA6	B	15	18	Right-handed 310
Helix 7	AA7	B	92	96	Right-handed 310
Helix 8	AA8	B	202	207	Right-handed 310
Helix 9	AA9	B	209	213	Right-handed 310
Helix 10	AB1	B	214	219	Right-handed alpha
Helix 11	AB2	C	15	18	Right-handed 310
Helix 12	AB3	C	92	96	Right-handed 310
Helix 13	AB4	C	202	207	Right-handed 310
Helix 14	AB5	C	209	213	Right-handed 310
Helix 15	AB6	C	214	219	Right-handed alpha
Helix 16	AB7	D	15	18	Right-handed 310
Helix 17	AB8	D	92	96	Right-handed 310
Helix 18	AB9	D	202	207	Right-handed 310
Helix 19	AC1	D	209	213	Right-handed 310
Helix 20	AC2	D	214	219	Right-handed alpha
Helix 21	AC3	E	15	18	Right-handed 310
Helix 22	AC4	E	92	96	Right-handed 310
Helix 23	AC5	E	202	207	Right-handed 310
Helix 24	AC6	E	209	213	Right-handed 310
Helix 25	AC7	E	214	219	Right-handed alpha
Helix 26	AC8	F	15	18	Right-handed 310
Helix 27	AC9	F	92	96	Right-handed 310
Helix 28	AD1	F	202	207	Right-handed 310
Helix 29	AD2	F	209	213	Right-handed 310
Helix 30	AD3	F	214	219	Right-handed alpha
Helix 31	AD4	G	15	18	Right-handed 310
Helix 32	AD5	G	92	96	Right-handed 310
Helix 33	AD6	G	202	207	Right-handed 310
Helix 34	AD7	G	209	213	Right-handed 310
Helix 35	AD8	G	214	219	Right-handed alpha
Helix 36	AD9	H	15	18	Right-handed 310
Helix 37	AE1	H	92	96	Right-handed 310
Helix 38	AE2	H	202	207	Right-handed 310
Helix 39	AE3	H	209	213	Right-handed 310
Helix 40	AE4	H	214	219	Right-handed alpha

There are 26 sheets in PDB entry 7Q9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	B	9	13	anti-parallel
Strand 4	B	20	24	anti-parallel
Strand 5	C	9	13	anti-parallel
Strand 6	C	20	24	anti-parallel
Strand 7	D	9	13	anti-parallel
Strand 8	D	20	24	anti-parallel
Strand 9	E	9	13	anti-parallel
Strand 10	E	20	24	anti-parallel
Strand 11	F	9	13	anti-parallel
Strand 12	F	20	24	anti-parallel
Strand 13	G	9	13	anti-parallel
Strand 14	G	20	24	anti-parallel
Strand 15	H	9	13	anti-parallel
Strand 16	H	20	24	anti-parallel
Strand 17	A	9	13	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	39	first strand
Strand 2	A	44	55	anti-parallel
Strand 3	A	61	71	anti-parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	98	102	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	160	first strand
Strand 2	A	164	171	anti-parallel
Strand 3	A	77	90	anti-parallel
Strand 4	A	237	256	anti-parallel
Strand 5	A	259	264	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	160	first strand
Strand 2	A	164	171	anti-parallel
Strand 3	A	77	90	anti-parallel
Strand 4	A	237	256	anti-parallel
Strand 5	A	267	277	anti-parallel
Strand 6	A	282	285	anti-parallel

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There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	128	first strand
Strand 2	A	131	151	anti-parallel
Strand 3	B	110	128	anti-parallel
Strand 4	B	131	151	anti-parallel
Strand 5	C	110	128	anti-parallel
Strand 6	C	131	151	anti-parallel
Strand 7	D	110	128	anti-parallel
Strand 8	D	131	151	anti-parallel
Strand 9	E	110	128	anti-parallel
Strand 10	E	131	151	anti-parallel
Strand 11	F	110	128	anti-parallel
Strand 12	F	131	151	anti-parallel
Strand 13	G	110	128	anti-parallel
Strand 14	G	131	151	anti-parallel
Strand 15	H	110	128	anti-parallel
Strand 16	H	131	151	anti-parallel
Strand 17	A	110	128	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	39	first strand
Strand 2	B	44	55	anti-parallel
Strand 3	B	61	71	anti-parallel
Strand 4	B	224	231	anti-parallel
Strand 5	B	98	102	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	160	first strand
Strand 2	B	164	171	anti-parallel
Strand 3	B	77	90	anti-parallel
Strand 4	B	237	256	anti-parallel
Strand 5	B	259	264	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	160	first strand
Strand 2	B	164	171	anti-parallel
Strand 3	B	77	90	anti-parallel
Strand 4	B	237	256	anti-parallel
Strand 5	B	267	277	anti-parallel
Strand 6	B	282	285	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	39	first strand
Strand 2	C	44	55	anti-parallel
Strand 3	C	61	71	anti-parallel
Strand 4	C	224	231	anti-parallel
Strand 5	C	98	102	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	160	first strand
Strand 2	C	164	171	anti-parallel
Strand 3	C	77	90	anti-parallel
Strand 4	C	237	256	anti-parallel
Strand 5	C	259	264	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	160	first strand
Strand 2	C	164	171	anti-parallel
Strand 3	C	77	90	anti-parallel
Strand 4	C	237	256	anti-parallel
Strand 5	C	267	277	anti-parallel
Strand 6	C	282	285	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	39	first strand
Strand 2	D	44	55	anti-parallel
Strand 3	D	61	71	anti-parallel
Strand 4	D	224	231	anti-parallel
Strand 5	D	98	102	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	160	first strand
Strand 2	D	164	171	anti-parallel
Strand 3	D	77	90	anti-parallel
Strand 4	D	237	256	anti-parallel
Strand 5	D	259	264	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	160	first strand
Strand 2	D	164	171	anti-parallel
Strand 3	D	77	90	anti-parallel
Strand 4	D	237	256	anti-parallel
Strand 5	D	267	277	anti-parallel
Strand 6	D	282	285	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	39	first strand
Strand 2	E	44	55	anti-parallel
Strand 3	E	61	71	anti-parallel
Strand 4	E	224	231	anti-parallel
Strand 5	E	98	102	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	160	first strand
Strand 2	E	164	171	anti-parallel
Strand 3	E	77	90	anti-parallel
Strand 4	E	237	256	anti-parallel
Strand 5	E	259	264	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	160	first strand
Strand 2	E	164	171	anti-parallel
Strand 3	E	77	90	anti-parallel
Strand 4	E	237	256	anti-parallel
Strand 5	E	267	277	anti-parallel
Strand 6	E	282	285	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	39	first strand
Strand 2	F	44	55	anti-parallel
Strand 3	F	61	71	anti-parallel
Strand 4	F	224	231	anti-parallel
Strand 5	F	98	102	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	160	first strand
Strand 2	F	164	171	anti-parallel
Strand 3	F	77	90	anti-parallel
Strand 4	F	237	256	anti-parallel
Strand 5	F	259	264	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	160	first strand
Strand 2	F	164	171	anti-parallel
Strand 3	F	77	90	anti-parallel
Strand 4	F	237	256	anti-parallel
Strand 5	F	267	277	anti-parallel
Strand 6	F	282	285	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	39	first strand
Strand 2	G	44	55	anti-parallel
Strand 3	G	61	71	anti-parallel
Strand 4	G	224	231	anti-parallel
Strand 5	G	98	102	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	160	first strand
Strand 2	G	164	171	anti-parallel
Strand 3	G	77	90	anti-parallel
Strand 4	G	237	256	anti-parallel
Strand 5	G	259	264	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	153	160	first strand
Strand 2	G	164	171	anti-parallel
Strand 3	G	77	90	anti-parallel
Strand 4	G	237	256	anti-parallel
Strand 5	G	267	277	anti-parallel
Strand 6	G	282	285	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	39	first strand
Strand 2	H	44	55	anti-parallel
Strand 3	H	61	71	anti-parallel
Strand 4	H	224	231	anti-parallel
Strand 5	H	98	102	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	160	first strand
Strand 2	H	164	171	anti-parallel
Strand 3	H	77	90	anti-parallel
Strand 4	H	237	256	anti-parallel
Strand 5	H	259	264	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	160	first strand
Strand 2	H	164	171	anti-parallel
Strand 3	H	77	90	anti-parallel
Strand 4	H	237	256	anti-parallel
Strand 5	H	267	277	anti-parallel
Strand 6	H	282	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q9Y