Analysis of interatomic Contacts of Structural Units in PDB entry:
7QAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QAA entry

There are 2 chains in PDB entry 7QAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 230ALA 462
B
 PRO 182ASN 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7QAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
230 235Right-handed alpha
Helix 2
AA2
A
236 248Right-handed alpha
Helix 3
AA3
A
268 282Right-handed alpha
Helix 4
AA4
A
283 290Right-handed alpha
Helix 5
AA5
A
298 322Right-handed alpha
Helix 6
AA6
A
339 345Right-handed alpha
Helix 7
AA7
A
347 358Right-handed alpha
Helix 8
AA8
A
358 365Right-handed alpha
Helix 9
AA9
A
368 381Right-handed alpha
Helix 10
AB1
A
390 413Right-handed alpha
Helix 11
AB2
A
418 425Right-handed alpha
Helix 12
AB3
A
425 439Right-handed alpha
Helix 13
AB4
A
451 461Right-handed alpha
Helix 14
AB5
B
183 199Right-handed alpha
Helix 15
AB6
B
201 205Right-handed 310
Helix 16
AB7
B
221 246Right-handed alpha
Helix 17
AB8
B
253 275Right-handed alpha
Helix 18
AB9
B
294 301Right-handed alpha
Helix 19
AC1
B
302 304Right-handed 310
Helix 20
AC2
B
305 317Right-handed alpha
Helix 21
AC3
B
318 320Right-handed 310
Helix 22
AC4
B
322 335Right-handed alpha
Helix 23
AC5
B
344 367Right-handed alpha
Helix 24
AC6
B
372 379Right-handed alpha
Helix 25
AC7
B
379 402Right-handed alpha
Helix 26
AC8
B
409 416Right-handed alpha
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There are 2 sheets in PDB entry 7QAA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
336 338anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
283 285anti-parallel
Strand 3
B
291 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il