Analysis of interatomic Contacts of Structural Units in PDB entry:
7QBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QBU entry

There are 2 chains in PDB entry 7QBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -7LEU 410
B
 MET 1LEU 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7QBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 56Right-handed 310
Helix 2
AA2
A
61 75Right-handed alpha
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
96 106Right-handed alpha
Helix 5
AA5
A
126 133Right-handed alpha
Helix 6
AA6
A
146 154Right-handed alpha
Helix 7
AA7
A
158 173Right-handed alpha
Helix 8
AA8
A
188 202Right-handed alpha
Helix 9
AA9
A
214 218Right-handed 310
Helix 10
AB1
A
234 249Right-handed alpha
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
273 279Right-handed alpha
Helix 13
AB4
A
295 306Right-handed alpha
Helix 14
AB5
A
319 323Right-handed 310
Helix 15
AB6
A
324 329Right-handed 310
Helix 16
AB7
A
349 357Right-handed alpha
Helix 17
AB8
A
376 381Right-handed alpha
Helix 18
AB9
A
384 407Right-handed alpha
Helix 19
AC1
B
61 76Right-handed alpha
Helix 20
AC2
B
90 94Right-handed 310
Helix 21
AC3
B
96 106Right-handed alpha
Helix 22
AC4
B
126 133Right-handed alpha
Helix 23
AC5
B
146 154Right-handed alpha
Helix 24
AC6
B
158 173Right-handed alpha
Helix 25
AC7
B
188 202Right-handed alpha
Helix 26
AC8
B
214 218Right-handed 310
Helix 27
AC9
B
234 249Right-handed alpha
Helix 28
AD1
B
268 272Right-handed 310
Helix 29
AD2
B
273 279Right-handed alpha
Helix 30
AD3
B
295 306Right-handed alpha
Helix 31
AD4
B
319 323Right-handed 310
Helix 32
AD5
B
324 329Right-handed 310
Helix 33
AD6
B
349 357Right-handed alpha
Helix 34
AD7
B
376 381Right-handed alpha
Helix 35
AD8
B
384 407Right-handed alpha
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There are 4 sheets in PDB entry 7QBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 8first strand
Strand 2
A
80 87parallel
Strand 3
A
111 116parallel
Strand 4
A
135 141parallel
Strand 5
A
174 181parallel
Strand 6
A
205 210parallel
Strand 7
A
253 257parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 314first strand
Strand 2
A
287 291parallel
Strand 3
A
339 342parallel
Strand 4
A
365 368parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
82 87parallel
Strand 3
B
111 116parallel
Strand 4
B
135 141parallel
Strand 5
B
174 181parallel
Strand 6
B
205 210parallel
Strand 7
B
253 257parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 314first strand
Strand 2
B
287 291parallel
Strand 3
B
339 342parallel
Strand 4
B
365 368parallel
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