Analysis of interatomic Contacts of Structural Units in PDB entry:
7QCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QCW entry

There are 2 chains in PDB entry 7QCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 10LEU 448
B
 LEU 8LEU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7QCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
25 42Right-handed alpha
Helix 3
AA3
A
53 60Right-handed alpha
Helix 4
AA4
A
61 67Right-handed 310
Helix 5
AA5
A
82 100Right-handed alpha
Helix 6
AA6
A
110 122Right-handed alpha
Helix 7
AA7
A
167 179Right-handed alpha
Helix 8
AA8
A
195 206Right-handed alpha
Helix 9
AA9
A
217 223Right-handed alpha
Helix 10
AB1
A
268 275Right-handed alpha
Helix 11
AB2
A
276 277Right-handed 310
Helix 12
AB3
A
287 287Right-handed 310
Helix 13
AB4
A
288 300Right-handed alpha
Helix 14
AB5
A
302 325Right-handed alpha
Helix 15
AB6
A
349 360Right-handed alpha
Helix 16
AB7
A
386 392Right-handed alpha
Helix 17
AB8
A
395 412Right-handed alpha
Helix 18
AB9
A
424 442Right-handed alpha
Helix 19
AC1
B
9 24Right-handed alpha
Helix 20
AC2
B
26 42Right-handed alpha
Helix 21
AC3
B
53 60Right-handed alpha
Helix 22
AC4
B
61 67Right-handed 310
Helix 23
AC5
B
81 100Right-handed alpha
Helix 24
AC6
B
110 123Right-handed alpha
Helix 25
AC7
B
167 179Right-handed alpha
Helix 26
AC8
B
195 206Right-handed alpha
Helix 27
AC9
B
217 223Right-handed alpha
Helix 28
AD1
B
268 273Right-handed alpha
Helix 29
AD2
B
286 302Right-handed alpha
Helix 30
AD3
B
302 326Right-handed alpha
Helix 31
AD4
B
349 360Right-handed alpha
Helix 32
AD5
B
386 391Right-handed alpha
Helix 33
AD6
B
395 411Right-handed alpha
Helix 34
AD7
B
426 442Right-handed alpha
Helix 35
AD8
B
444 448Right-handed 310
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There are 7 sheets in PDB entry 7QCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
362 363parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 108first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
209 213parallel
Strand 5
A
182 185parallel
Strand 6
A
126 130parallel
Strand 7
A
154 158parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
339 343anti-parallel
Strand 3
A
381 385anti-parallel
Strand 4
A
365 366anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
421 422anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
362 363parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 108first strand
Strand 2
B
250 254anti-parallel
Strand 3
B
235 239anti-parallel
Strand 4
B
209 213parallel
Strand 5
B
182 185parallel
Strand 6
B
128 130parallel
Strand 7
B
153 155parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 343first strand
Strand 2
B
381 385anti-parallel
Strand 3
B
365 366anti-parallel
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