Analysis of interatomic Contacts of Structural Units in PDB entry:
7QD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QD5 entry

There are 6 chains in PDB entry 7QD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	LYS 982
B	C 28	C 72
C	G 1029	G 1073
D	GLY 2	LYS 982
E	C 28	C 72
F	G 1029	G 1073

There are 88 helices in PDB entry 7QD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	16	Right-handed alpha
Helix 2	AA2	A	24	29	Right-handed alpha
Helix 3	AA3	A	33	43	Right-handed alpha
Helix 4	AA4	A	45	61	Right-handed alpha
Helix 5	AA5	A	73	85	Right-handed alpha
Helix 6	AA6	A	98	113	Right-handed alpha
Helix 7	AA7	A	118	136	Right-handed alpha
Helix 8	AA8	A	138	153	Right-handed alpha
Helix 9	AA9	A	159	185	Right-handed alpha
Helix 10	AB1	A	187	197	Right-handed alpha
Helix 11	AB2	A	206	213	Right-handed alpha
Helix 12	AB3	A	219	237	Right-handed alpha
Helix 13	AB4	A	246	260	Right-handed alpha
Helix 14	AB5	A	261	268	Right-handed alpha
Helix 15	AB6	A	269	317	Right-handed alpha
Helix 16	AB7	A	318	342	Right-handed alpha
Helix 17	AB8	A	345	354	Right-handed alpha
Helix 18	AB9	A	355	370	Right-handed alpha
Helix 19	AC1	A	377	383	Right-handed 310
Helix 20	AC2	A	384	390	Right-handed alpha
Helix 21	AC3	A	391	399	Right-handed alpha
Helix 22	AC4	A	407	424	Right-handed alpha
Helix 23	AC5	A	441	446	Right-handed alpha
Helix 24	AC6	A	453	471	Right-handed alpha
Helix 25	AC7	A	484	489	Right-handed alpha
Helix 26	AC8	A	491	496	Right-handed alpha
Helix 27	AC9	A	512	530	Right-handed alpha
Helix 28	AD1	A	557	569	Right-handed alpha
Helix 29	AD2	A	575	587	Right-handed alpha
Helix 30	AD3	A	588	592	Right-handed 310
Helix 31	AD4	A	602	619	Right-handed alpha
Helix 32	AD5	A	621	629	Right-handed alpha
Helix 33	AD6	A	633	644	Right-handed alpha
Helix 34	AD7	A	646	663	Right-handed alpha
Helix 35	AD8	A	665	669	Right-handed 310
Helix 36	AD9	A	728	738	Right-handed alpha
Helix 37	AE1	A	756	765	Right-handed alpha
Helix 38	AE2	A	804	823	Right-handed alpha
Helix 39	AE3	A	827	833	Right-handed alpha
Helix 40	AE4	A	841	866	Right-handed alpha
Helix 41	AE5	A	867	891	Right-handed alpha
Helix 42	AE6	A	892	897	Right-handed 310
Helix 43	AE7	A	902	938	Right-handed alpha
Helix 44	AE8	A	945	949	Right-handed 310
Helix 45	AE9	D	8	16	Right-handed alpha
Helix 46	AF1	D	24	29	Right-handed alpha
Helix 47	AF2	D	33	43	Right-handed alpha
Helix 48	AF3	D	45	61	Right-handed alpha
Helix 49	AF4	D	73	85	Right-handed alpha
Helix 50	AF5	D	98	113	Right-handed alpha
Helix 51	AF6	D	118	136	Right-handed alpha
Helix 52	AF7	D	138	153	Right-handed alpha
Helix 53	AF8	D	159	184	Right-handed alpha
Helix 54	AF9	D	187	197	Right-handed alpha
Helix 55	AG1	D	206	213	Right-handed alpha
Helix 56	AG2	D	219	237	Right-handed alpha
Helix 57	AG3	D	246	260	Right-handed alpha
Helix 58	AG4	D	261	268	Right-handed alpha
Helix 59	AG5	D	269	318	Right-handed alpha
Helix 60	AG6	D	318	342	Right-handed alpha
Helix 61	AG7	D	345	354	Right-handed alpha
Helix 62	AG8	D	355	369	Right-handed alpha
Helix 63	AG9	D	377	383	Right-handed 310
Helix 64	AH1	D	384	390	Right-handed alpha
Helix 65	AH2	D	391	399	Right-handed alpha
Helix 66	AH3	D	407	424	Right-handed alpha
Helix 67	AH4	D	441	446	Right-handed alpha
Helix 68	AH5	D	453	472	Right-handed alpha
Helix 69	AH6	D	484	489	Right-handed alpha
Helix 70	AH7	D	491	496	Right-handed alpha
Helix 71	AH8	D	512	530	Right-handed alpha
Helix 72	AH9	D	557	569	Right-handed alpha
Helix 73	AI1	D	575	587	Right-handed alpha
Helix 74	AI2	D	588	592	Right-handed 310
Helix 75	AI3	D	602	619	Right-handed alpha
Helix 76	AI4	D	621	629	Right-handed alpha
Helix 77	AI5	D	633	644	Right-handed alpha
Helix 78	AI6	D	646	663	Right-handed alpha
Helix 79	AI7	D	665	669	Right-handed 310
Helix 80	AI8	D	728	738	Right-handed alpha
Helix 81	AI9	D	756	765	Right-handed alpha
Helix 82	AJ1	D	804	823	Right-handed alpha
Helix 83	AJ2	D	827	833	Right-handed alpha
Helix 84	AJ3	D	841	866	Right-handed alpha
Helix 85	AJ4	D	867	891	Right-handed alpha
Helix 86	AJ5	D	892	897	Right-handed 310
Helix 87	AJ6	D	902	938	Right-handed alpha
Helix 88	AJ7	D	945	949	Right-handed 310

There are 6 sheets in PDB entry 7QD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	474	476	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	957	958	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	683	first strand
Strand 2	A	704	708	anti-parallel
Strand 3	A	720	722	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	403	first strand
Strand 2	D	474	476	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	574	first strand
Strand 2	D	957	958	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	683	first strand
Strand 2	D	704	708	anti-parallel
Strand 3	D	720	722	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QD5