Analysis of interatomic Contacts of Structural Units in PDB entry:
7QD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QD8 entry

There are 2 chains in PDB entry 7QD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 966
B
 GLY 2GLU 966
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 7QD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
18 23Right-handed 310
Helix 3
AA3
A
24 30Right-handed alpha
Helix 4
AA4
A
33 43Right-handed alpha
Helix 5
AA5
A
45 58Right-handed alpha
Helix 6
AA6
A
65 69Right-handed 310
Helix 7
AA7
A
74 84Right-handed alpha
Helix 8
AA8
A
87 94Right-handed alpha
Helix 9
AA9
A
98 112Right-handed alpha
Helix 10
AB1
A
118 136Right-handed alpha
Helix 11
AB2
A
138 153Right-handed alpha
Helix 12
AB3
A
159 184Right-handed alpha
Helix 13
AB4
A
187 196Right-handed alpha
Helix 14
AB5
A
206 213Right-handed alpha
Helix 15
AB6
A
219 229Right-handed alpha
Helix 16
AB7
A
229 236Right-handed alpha
Helix 17
AB8
A
246 260Right-handed alpha
Helix 18
AB9
A
269 319Right-handed alpha
Helix 19
AC1
A
321 343Right-handed alpha
Helix 20
AC2
A
345 352Right-handed alpha
Helix 21
AC3
A
356 370Right-handed alpha
Helix 22
AC4
A
378 384Right-handed alpha
Helix 23
AC5
A
384 390Right-handed alpha
Helix 24
AC6
A
391 398Right-handed alpha
Helix 25
AC7
A
407 424Right-handed alpha
Helix 26
AC8
A
453 471Right-handed alpha
Helix 27
AC9
A
484 489Right-handed alpha
Helix 28
AD1
A
491 499Right-handed alpha
Helix 29
AD2
A
510 530Right-handed alpha
Helix 30
AD3
A
557 570Right-handed alpha
Helix 31
AD4
A
575 586Right-handed alpha
Helix 32
AD5
A
587 592Right-handed 310
Helix 33
AD6
A
602 618Right-handed alpha
Helix 34
AD7
A
621 629Right-handed alpha
Helix 35
AD8
A
633 641Right-handed alpha
Helix 36
AD9
A
648 664Right-handed alpha
Helix 37
AE1
A
665 670Right-handed 310
Helix 38
AE2
A
725 737Right-handed alpha
Helix 39
AE3
A
752 766Right-handed alpha
Helix 40
AE4
A
803 808Right-handed alpha
Helix 41
AE5
A
809 812Right-handed 310
Helix 42
AE6
A
813 824Right-handed alpha
Helix 43
AE7
A
827 838Right-handed alpha
Helix 44
AE8
A
841 866Right-handed alpha
Helix 45
AE9
A
866 891Right-handed alpha
Helix 46
AF1
A
896 909Right-handed alpha
Helix 47
AF2
A
911 938Right-handed alpha
Helix 48
AF3
B
8 17Right-handed alpha
Helix 49
AF4
B
18 23Right-handed 310
Helix 50
AF5
B
24 30Right-handed alpha
Helix 51
AF6
B
33 43Right-handed alpha
Helix 52
AF7
B
45 58Right-handed alpha
Helix 53
AF8
B
65 69Right-handed 310
Helix 54
AF9
B
74 84Right-handed alpha
Helix 55
AG1
B
87 94Right-handed alpha
Helix 56
AG2
B
98 112Right-handed alpha
Helix 57
AG3
B
118 136Right-handed alpha
Helix 58
AG4
B
138 153Right-handed alpha
Helix 59
AG5
B
159 184Right-handed alpha
Helix 60
AG6
B
187 196Right-handed alpha
Helix 61
AG7
B
206 213Right-handed alpha
Helix 62
AG8
B
219 229Right-handed alpha
Helix 63
AG9
B
229 236Right-handed alpha
Helix 64
AH1
B
246 260Right-handed alpha
Helix 65
AH2
B
269 313Right-handed alpha
Helix 66
AH3
B
318 320Right-handed 310
Helix 67
AH4
B
321 343Right-handed alpha
Helix 68
AH5
B
345 352Right-handed alpha
Helix 69
AH6
B
356 370Right-handed alpha
Helix 70
AH7
B
378 390Right-handed alpha
Helix 71
AH8
B
391 398Right-handed alpha
Helix 72
AH9
B
407 424Right-handed alpha
Helix 73
AI1
B
453 471Right-handed alpha
Helix 74
AI2
B
484 489Right-handed alpha
Helix 75
AI3
B
491 499Right-handed alpha
Helix 76
AI4
B
510 530Right-handed alpha
Helix 77
AI5
B
557 570Right-handed alpha
Helix 78
AI6
B
575 586Right-handed alpha
Helix 79
AI7
B
587 592Right-handed 310
Helix 80
AI8
B
602 618Right-handed alpha
Helix 81
AI9
B
621 629Right-handed alpha
Helix 82
AJ1
B
633 641Right-handed alpha
Helix 83
AJ2
B
648 664Right-handed alpha
Helix 84
AJ3
B
665 670Right-handed 310
Helix 85
AJ4
B
725 737Right-handed alpha
Helix 86
AJ5
B
752 766Right-handed alpha
Helix 87
AJ6
B
803 808Right-handed alpha
Helix 88
AJ7
B
809 812Right-handed 310
Helix 89
AJ8
B
813 824Right-handed alpha
Helix 90
AJ9
B
827 838Right-handed alpha
Helix 91
AK1
B
841 866Right-handed alpha
Helix 92
AK2
B
866 891Right-handed alpha
Helix 93
AK3
B
896 907Right-handed alpha
Helix 94
AK4
B
913 938Right-handed alpha
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There are 5 sheets in PDB entry 7QD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
474 476anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 574first strand
Strand 2
A
957 958parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 722first strand
Strand 2
A
768 770parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 574first strand
Strand 2
B
957 958parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
720 722first strand
Strand 2
B
768 770parallel
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