Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QDA entry

There is 1 chain in PDB entry 7QDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7QDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
11 21Right-handed alpha
Helix 3
AA3
A
25 27Right-handed 310
Helix 4
AA4
A
28 36Right-handed alpha
Helix 5
AA5
A
42 59Right-handed alpha
Helix 6
AA6
A
64 71Right-handed alpha
Helix 7
AA7
A
75 85Right-handed alpha
Helix 8
AA8
A
99 103Right-handed 310
Helix 9
AA9
A
125 137Right-handed alpha
Helix 10
AB1
A
153 163Right-handed alpha
Helix 11
AB2
A
166 170Right-handed 310
Helix 12
AB3
A
189 200Right-handed alpha
Helix 13
AB4
A
212 221Right-handed alpha
Helix 14
AB5
A
234 236Right-handed 310
Helix 15
AB6
A
237 251Right-handed alpha
Helix 16
AB7
A
252 256Right-handed 310
Helix 17
AB8
A
259 268Right-handed alpha
Helix 18
AB9
A
270 273Right-handed 310
Helix 19
AC1
A
285 306Right-handed alpha
Helix 20
AC2
A
307 309Right-handed 310
Helix 21
AC3
A
312 314Right-handed 310
Helix 22
AC4
A
324 336Right-handed alpha
Helix 23
AC5
A
361 365Right-handed 310
Helix 24
AC6
A
394 405Right-handed alpha
Helix 25
AC7
A
427 442Right-handed alpha
Helix 26
AC8
A
453 465Right-handed alpha
Helix 27
AC9
A
489 493Right-handed 310
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There are 5 sheets in PDB entry 7QDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 94first strand
Strand 2
A
104 113anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
118 119parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
203 205parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
184 185anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
225 232parallel
Strand 3
A
316 321parallel
Strand 4
A
341 346parallel
Strand 5
A
350 355anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
409 415anti-parallel
Strand 3
A
382 388parallel
Strand 4
A
445 451parallel
Strand 5
A
470 476parallel
Strand 6
A
479 482anti-parallel
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