Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QDH entry

There are 3 chains in PDB entry 7QDH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 15	ASP 1146
B	CYS 15	ASP 1146
C	CYS 15	ASP 1146

There are 60 helices in PDB entry 7QDH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	338	343	Right-handed alpha
Helix 3	AA3	A	365	369	Right-handed 310
Helix 4	AA4	A	383	387	Right-handed 310
Helix 5	AA5	A	405	408	Right-handed 310
Helix 6	AA6	A	416	422	Right-handed alpha
Helix 7	AA7	A	737	744	Right-handed alpha
Helix 8	AA8	A	746	755	Right-handed alpha
Helix 9	AA9	A	757	783	Right-handed alpha
Helix 10	AB1	A	811	815	Right-handed 310
Helix 11	AB2	A	816	826	Right-handed alpha
Helix 12	AB3	A	866	885	Right-handed alpha
Helix 13	AB4	A	886	891	Right-handed alpha
Helix 14	AB5	A	897	909	Right-handed alpha
Helix 15	AB6	A	912	919	Right-handed alpha
Helix 16	AB7	A	919	940	Right-handed alpha
Helix 17	AB8	A	945	966	Right-handed alpha
Helix 18	AB9	A	976	984	Right-handed alpha
Helix 19	AC1	A	985	1031	Right-handed alpha
Helix 20	AC2	A	1140	1146	Right-handed alpha
Helix 21	AC3	B	294	304	Right-handed alpha
Helix 22	AC4	B	383	387	Right-handed 310
Helix 23	AC5	B	405	408	Right-handed 310
Helix 24	AC6	B	416	421	Right-handed alpha
Helix 25	AC7	B	737	744	Right-handed alpha
Helix 26	AC8	B	746	757	Right-handed alpha
Helix 27	AC9	B	758	783	Right-handed alpha
Helix 28	AD1	B	811	815	Right-handed 310
Helix 29	AD2	B	816	829	Right-handed alpha
Helix 30	AD3	B	866	885	Right-handed alpha
Helix 31	AD4	B	886	891	Right-handed alpha
Helix 32	AD5	B	897	909	Right-handed alpha
Helix 33	AD6	B	912	919	Right-handed alpha
Helix 34	AD7	B	919	941	Right-handed alpha
Helix 35	AD8	B	946	968	Right-handed alpha
Helix 36	AD9	B	976	984	Right-handed alpha
Helix 37	AE1	B	985	1032	Right-handed alpha
Helix 38	AE2	B	1140	1146	Right-handed alpha
Helix 39	AE3	C	294	304	Right-handed alpha
Helix 40	AE4	C	337	343	Right-handed alpha
Helix 41	AE5	C	349	353	Right-handed 310
Helix 42	AE6	C	365	372	Right-handed alpha
Helix 43	AE7	C	384	388	Right-handed 310
Helix 44	AE8	C	405	408	Right-handed 310
Helix 45	AE9	C	416	422	Right-handed alpha
Helix 46	AF1	C	502	505	Right-handed 310
Helix 47	AF2	C	737	743	Right-handed alpha
Helix 48	AF3	C	746	757	Right-handed alpha
Helix 49	AF4	C	758	783	Right-handed alpha
Helix 50	AF5	C	811	815	Right-handed 310
Helix 51	AF6	C	816	826	Right-handed alpha
Helix 52	AF7	C	866	885	Right-handed alpha
Helix 53	AF8	C	886	891	Right-handed alpha
Helix 54	AF9	C	897	909	Right-handed alpha
Helix 55	AG1	C	913	919	Right-handed alpha
Helix 56	AG2	C	919	941	Right-handed alpha
Helix 57	AG3	C	945	968	Right-handed alpha
Helix 58	AG4	C	976	984	Right-handed alpha
Helix 59	AG5	C	985	1032	Right-handed alpha
Helix 60	AG6	C	1140	1146	Right-handed alpha

There are 48 sheets in PDB entry 7QDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	A	264	268	anti-parallel
Strand 4	A	90	95	anti-parallel
Strand 5	A	190	197	anti-parallel
Strand 6	A	200	207	anti-parallel
Strand 7	A	222	230	anti-parallel
Strand 8	A	36	37	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	577	anti-parallel
Strand 4	C	584	588	anti-parallel
Strand 5	C	551	554	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	275	277	anti-parallel
Strand 3	A	288	290	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	246	anti-parallel
Strand 3	A	101	105	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	246	anti-parallel
Strand 3	A	141	145	parallel
Strand 4	A	152	154	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	126	130	anti-parallel
Strand 3	A	168	170	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	593	599	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	538	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	566	567	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	380	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	393	403	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	693	695	parallel
Strand 3	A	670	673	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1076	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	736	first strand
Strand 2	A	858	859	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	C	702	703	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1080	1082	anti-parallel
Strand 4	A	1132	1134	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1095	1097	first strand
Strand 2	A	1102	1104	anti-parallel
Strand 3	A	1113	1114	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	264	269	anti-parallel
Strand 4	B	90	95	anti-parallel
Strand 5	B	190	197	anti-parallel
Strand 6	B	200	207	anti-parallel
Strand 7	B	224	229	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	274	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	246	anti-parallel
Strand 3	B	141	145	parallel
Strand 4	B	152	154	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	246	anti-parallel
Strand 3	B	101	105	anti-parallel
Strand 4	B	117	121	anti-parallel
Strand 5	B	126	130	anti-parallel
Strand 6	B	168	170	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	317	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	649	651	anti-parallel
Strand 5	B	643	644	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	327	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	583	588	anti-parallel
Strand 5	B	575	578	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	507	513	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	C	788	789	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	715	first strand
Strand 2	B	1072	1076	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	727	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1080	1081	first strand
Strand 2	B	1132	1133	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1089	1090	first strand
Strand 2	B	1120	1121	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1095	1096	first strand
Strand 2	B	1103	1104	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	60	66	anti-parallel
Strand 3	C	264	269	anti-parallel
Strand 4	C	90	94	anti-parallel
Strand 5	C	190	197	anti-parallel
Strand 6	C	200	207	anti-parallel
Strand 7	C	224	228	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	117	121	anti-parallel
Strand 5	C	126	130	anti-parallel
Strand 6	C	168	170	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	160	163	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	154	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	243	246	parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	314	first strand
Strand 2	C	595	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	650	anti-parallel
Strand 5	C	643	644	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	592	593	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	540	543	parallel
Strand 3	C	546	549	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	393	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	665	667	first strand
Strand 2	C	670	675	anti-parallel
Strand 3	C	691	696	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	727	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	727	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1095	1097	anti-parallel
Strand 4	C	1102	1104	anti-parallel
Strand 5	C	1113	1114	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1121	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QDH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDH