Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QDP entry

There are 7 chains in PDB entry 7QDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -10	PRO 134
B	MET 0	GLN 133
C	GLN 2	PRO 134
D	THR 1	PRO 134
E	LEU 164	SER 531
F	THR 74	THR 526
G	LEU 164	TYR 328

There are 32 helices in PDB entry 7QDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	44	63	Right-handed alpha
Helix 3	AA3	A	65	79	Right-handed alpha
Helix 4	AA4	A	80	85	Right-handed 310
Helix 5	AA5	A	101	116	Right-handed alpha
Helix 6	AA6	A	124	129	Right-handed 310
Helix 7	AA7	B	14	24	Right-handed alpha
Helix 8	AA8	B	44	62	Right-handed alpha
Helix 9	AA9	B	65	79	Right-handed alpha
Helix 10	AB1	B	80	85	Right-handed 310
Helix 11	AB2	B	101	116	Right-handed alpha
Helix 12	AB3	B	124	129	Right-handed 310
Helix 13	AB4	C	14	24	Right-handed alpha
Helix 14	AB5	C	44	63	Right-handed alpha
Helix 15	AB6	C	65	79	Right-handed alpha
Helix 16	AB7	C	80	85	Right-handed 310
Helix 17	AB8	C	101	116	Right-handed alpha
Helix 18	AB9	C	124	129	Right-handed 310
Helix 19	AC1	D	14	24	Right-handed alpha
Helix 20	AC2	D	44	62	Right-handed alpha
Helix 21	AC3	D	65	79	Right-handed alpha
Helix 22	AC4	D	80	85	Right-handed 310
Helix 23	AC5	D	101	116	Right-handed alpha
Helix 24	AC6	D	124	129	Right-handed 310
Helix 25	AC7	E	293	295	Right-handed 310
Helix 26	AC8	E	321	325	Right-handed 310
Helix 27	AC9	F	293	295	Right-handed 310
Helix 28	AD1	F	321	325	Right-handed 310
Helix 29	AD2	G	293	295	Right-handed 310
Helix 30	AD3	G	321	325	Right-handed 310
Helix 31	AD4	H	293	295	Right-handed 310
Helix 32	AD5	H	321	325	Right-handed 310

There are 38 sheets in PDB entry 7QDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	35	first strand
Strand 2	A	96	100	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	96	100	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	35	first strand
Strand 2	C	96	100	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	35	first strand
Strand 2	D	96	100	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	175	first strand
Strand 2	E	182	187	anti-parallel
Strand 3	E	220	221	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	216	first strand
Strand 2	E	194	199	anti-parallel
Strand 3	E	228	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	248	first strand
Strand 2	E	268	276	parallel
Strand 3	E	308	317	anti-parallel
Strand 4	E	297	304	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	335	343	parallel
Strand 3	E	326	332	anti-parallel
Strand 4	E	283	286	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	352	first strand
Strand 2	E	369	376	anti-parallel
Strand 3	E	402	406	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	358	361	first strand
Strand 2	E	425	435	parallel
Strand 3	E	414	422	anti-parallel
Strand 4	E	380	385	anti-parallel
Strand 5	E	388	391	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	445	first strand
Strand 2	E	450	456	anti-parallel
Strand 3	E	498	499	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	445	first strand
Strand 2	E	450	456	anti-parallel
Strand 3	E	504	505	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	462	463	first strand
Strand 2	E	511	517	anti-parallel
Strand 3	E	522	528	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	152	159	parallel
Strand 3	F	80	82	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	152	159	parallel
Strand 3	F	139	146	anti-parallel
Strand 4	F	102	107	anti-parallel
Strand 5	F	110	112	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	93	first strand
Strand 2	F	125	130	anti-parallel
Strand 3	F	116	117	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	175	first strand
Strand 2	F	182	189	anti-parallel
Strand 3	F	220	221	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	216	first strand
Strand 2	F	193	199	anti-parallel
Strand 3	F	228	234	anti-parallel
Strand 4	F	239	243	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	248	first strand
Strand 2	F	268	277	parallel
Strand 3	F	308	317	anti-parallel
Strand 4	F	297	304	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	263	first strand
Strand 2	F	335	345	parallel
Strand 3	F	326	332	anti-parallel
Strand 4	F	283	286	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	352	first strand
Strand 2	F	369	375	anti-parallel
Strand 3	F	402	406	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	359	first strand
Strand 2	F	425	433	parallel
Strand 3	F	416	422	anti-parallel
Strand 4	F	380	385	anti-parallel
Strand 5	F	388	391	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	461	463	first strand
Strand 2	F	515	517	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	175	first strand
Strand 2	G	182	189	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	216	first strand
Strand 2	G	196	198	anti-parallel
Strand 3	G	229	230	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	245	248	first strand
Strand 2	G	268	276	parallel
Strand 3	G	308	317	anti-parallel
Strand 4	G	297	304	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	263	first strand
Strand 2	G	335	345	parallel
Strand 3	G	326	332	anti-parallel
Strand 4	G	283	287	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	352	first strand
Strand 2	G	369	376	anti-parallel
Strand 3	G	402	406	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	361	first strand
Strand 2	G	425	435	parallel
Strand 3	G	416	422	anti-parallel
Strand 4	G	380	385	anti-parallel
Strand 5	G	388	391	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	440	447	first strand
Strand 2	G	450	456	anti-parallel
Strand 3	G	503	504	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	462	463	first strand
Strand 2	G	511	517	anti-parallel
Strand 3	G	522	528	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	175	first strand
Strand 2	H	182	187	anti-parallel
Strand 3	H	220	221	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	214	216	first strand
Strand 2	H	193	199	anti-parallel
Strand 3	H	228	234	anti-parallel
Strand 4	H	239	243	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	245	248	first strand
Strand 2	H	268	276	parallel
Strand 3	H	308	317	anti-parallel
Strand 4	H	297	304	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	259	263	first strand
Strand 2	H	335	345	parallel
Strand 3	H	326	332	anti-parallel
Strand 4	H	283	287	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	349	352	first strand
Strand 2	H	369	376	anti-parallel
Strand 3	H	402	406	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	388	391	first strand
Strand 2	H	380	385	anti-parallel
Strand 3	H	416	422	anti-parallel
Strand 4	H	425	431	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	454	455	first strand
Strand 2	H	500	501	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDP