Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QDX entry

There are 2 chains in PDB entry 7QDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 24SER 482
B
 ARG 23GLY 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7QDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 32Right-handed 310
Helix 2
AA2
A
74 85Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
125 132Right-handed alpha
Helix 5
AA5
A
154 159Right-handed alpha
Helix 6
AA6
A
167 171Right-handed 310
Helix 7
AA7
A
176 178Right-handed 310
Helix 8
AA8
A
186 198Right-handed alpha
Helix 9
AA9
A
217 225Right-handed alpha
Helix 10
AB1
A
248 259Right-handed alpha
Helix 11
AB2
A
273 287Right-handed alpha
Helix 12
AB3
A
299 309Right-handed alpha
Helix 13
AB4
A
324 331Right-handed alpha
Helix 14
AB5
A
335 347Right-handed alpha
Helix 15
AB6
A
362 372Right-handed alpha
Helix 16
AB7
A
446 465Right-handed alpha
Helix 17
AB8
A
468 475Right-handed alpha
Helix 18
AB9
B
30 32Right-handed 310
Helix 19
AC1
B
44 48Right-handed 310
Helix 20
AC2
B
74 85Right-handed alpha
Helix 21
AC3
B
95 108Right-handed alpha
Helix 22
AC4
B
125 137Right-handed alpha
Helix 23
AC5
B
154 159Right-handed 310
Helix 24
AC6
B
167 172Right-handed alpha
Helix 25
AC7
B
176 178Right-handed 310
Helix 26
AC8
B
186 197Right-handed alpha
Helix 27
AC9
B
217 225Right-handed alpha
Helix 28
AD1
B
249 259Right-handed alpha
Helix 29
AD2
B
273 287Right-handed alpha
Helix 30
AD3
B
299 310Right-handed alpha
Helix 31
AD4
B
325 331Right-handed alpha
Helix 32
AD5
B
335 347Right-handed alpha
Helix 33
AD6
B
362 372Right-handed alpha
Helix 34
AD7
B
380 384Right-handed 310
Helix 35
AD8
B
445 465Right-handed alpha
Helix 36
AD9
B
468 476Right-handed alpha
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There are 10 sheets in PDB entry 7QDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
478 480anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
59 60anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
87 90parallel
Strand 3
A
240 243parallel
Strand 4
A
263 267parallel
Strand 5
A
291 297parallel
Strand 6
A
313 316parallel
Strand 7
A
354 357parallel
Strand 8
A
376 379parallel
Strand 9
A
64 66parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
201 205anti-parallel
Strand 4
A
180 182parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
173 174anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
478 480anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
58 60anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
87 90parallel
Strand 3
B
240 243parallel
Strand 4
B
263 267parallel
Strand 5
B
291 297parallel
Strand 6
B
313 316parallel
Strand 7
B
354 357parallel
Strand 8
B
376 379parallel
Strand 9
B
64 66parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
173 174anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
201 205parallel
Strand 3
B
211 216anti-parallel
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