Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QDY entry

There are 5 chains in PDB entry 7QDY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 1246
B	LEU 353	GLN 1564
C	MET 1	ILE 305
D	MET 1	ILE 305
E	U 1	U 6

There are115 helices in PDB entry 7QDY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	64	Right-handed alpha
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	86	91	Right-handed 310
Helix 4	AA4	A	252	263	Right-handed alpha
Helix 5	AA5	A	312	323	Right-handed alpha
Helix 6	AA6	A	334	353	Right-handed alpha
Helix 7	AA7	A	364	377	Right-handed alpha
Helix 8	AA8	A	399	409	Right-handed alpha
Helix 9	AA9	A	413	415	Right-handed 310
Helix 10	AB1	A	424	428	Right-handed 310
Helix 11	AB2	A	433	444	Right-handed alpha
Helix 12	AB3	A	463	471	Right-handed alpha
Helix 13	AB4	A	514	529	Right-handed alpha
Helix 14	AB5	A	547	563	Right-handed alpha
Helix 15	AB6	A	575	587	Right-handed alpha
Helix 16	AB7	A	593	609	Right-handed alpha
Helix 17	AB8	A	613	617	Right-handed 310
Helix 18	AB9	A	618	631	Right-handed alpha
Helix 19	AC1	A	640	652	Right-handed alpha
Helix 20	AC2	A	662	668	Right-handed alpha
Helix 21	AC3	A	693	703	Right-handed alpha
Helix 22	AC4	A	725	734	Right-handed alpha
Helix 23	AC5	A	747	756	Right-handed alpha
Helix 24	AC6	A	761	768	Right-handed alpha
Helix 25	AC7	A	769	771	Right-handed 310
Helix 26	AC8	A	772	777	Right-handed alpha
Helix 27	AC9	A	778	794	Right-handed alpha
Helix 28	AD1	A	807	831	Right-handed alpha
Helix 29	AD2	A	832	839	Right-handed alpha
Helix 30	AD3	A	884	888	Right-handed 310
Helix 31	AD4	A	921	923	Right-handed 310
Helix 32	AD5	A	936	948	Right-handed alpha
Helix 33	AD6	A	958	974	Right-handed alpha
Helix 34	AD7	A	992	1010	Right-handed alpha
Helix 35	AD8	A	1011	1012	Right-handed 310
Helix 36	AD9	A	1013	1017	Right-handed 310
Helix 37	AE1	A	1019	1044	Right-handed alpha
Helix 38	AE2	A	1051	1065	Right-handed alpha
Helix 39	AE3	A	1075	1083	Right-handed alpha
Helix 40	AE4	A	1087	1097	Right-handed alpha
Helix 41	AE5	A	1104	1113	Right-handed alpha
Helix 42	AE6	A	1114	1116	Right-handed 310
Helix 43	AE7	A	1128	1151	Right-handed alpha
Helix 44	AE8	A	1157	1163	Right-handed alpha
Helix 45	AE9	A	1169	1177	Right-handed alpha
Helix 46	AF1	A	1181	1189	Right-handed alpha
Helix 47	AF2	A	1192	1205	Right-handed alpha
Helix 48	AF3	A	1208	1218	Right-handed alpha
Helix 49	AF4	A	1219	1230	Right-handed alpha
Helix 50	AF5	A	1236	1240	Right-handed 310
Helix 51	AF6	B	354	366	Right-handed alpha
Helix 52	AF7	B	369	383	Right-handed alpha
Helix 53	AF8	B	388	400	Right-handed alpha
Helix 54	AF9	B	405	416	Right-handed alpha
Helix 55	AG1	B	421	436	Right-handed alpha
Helix 56	AG2	B	438	452	Right-handed alpha
Helix 57	AG3	B	456	470	Right-handed alpha
Helix 58	AG4	B	479	489	Right-handed alpha
Helix 59	AG5	B	496	504	Right-handed alpha
Helix 60	AG6	B	509	524	Right-handed alpha
Helix 61	AG7	B	529	541	Right-handed alpha
Helix 62	AG8	B	546	557	Right-handed alpha
Helix 63	AG9	B	563	577	Right-handed alpha
Helix 64	AH1	B	579	594	Right-handed alpha
Helix 65	AH2	B	597	611	Right-handed alpha
Helix 66	AH3	B	614	627	Right-handed alpha
Helix 67	AH4	B	631	645	Right-handed alpha
Helix 68	AH5	B	647	662	Right-handed alpha
Helix 69	AH6	B	665	686	Right-handed alpha
Helix 70	AH7	B	688	710	Right-handed alpha
Helix 71	AH8	B	713	726	Right-handed alpha
Helix 72	AH9	B	741	745	Right-handed 310
Helix 73	AI1	B	754	773	Right-handed alpha
Helix 74	AI2	B	775	796	Right-handed alpha
Helix 75	AI3	B	803	821	Right-handed alpha
Helix 76	AI4	B	824	836	Right-handed alpha
Helix 77	AI5	B	842	857	Right-handed alpha
Helix 78	AI6	B	860	874	Right-handed alpha
Helix 79	AI7	B	876	891	Right-handed alpha
Helix 80	AI8	B	894	908	Right-handed alpha
Helix 81	AI9	B	912	924	Right-handed alpha
Helix 82	AJ1	B	926	943	Right-handed alpha
Helix 83	AJ2	B	951	959	Right-handed alpha
Helix 84	AJ3	B	960	976	Right-handed alpha
Helix 85	AJ4	B	979	993	Right-handed alpha
Helix 86	AJ5	B	995	1010	Right-handed alpha
Helix 87	AJ6	B	1016	1033	Right-handed alpha
Helix 88	AJ7	B	1035	1045	Right-handed alpha
Helix 89	AJ8	B	1050	1065	Right-handed alpha
Helix 90	AJ9	B	1066	1080	Right-handed alpha
Helix 91	AK1	B	1084	1102	Right-handed alpha
Helix 92	AK2	B	1103	1116	Right-handed alpha
Helix 93	AK3	B	1123	1135	Right-handed alpha
Helix 94	AK4	B	1137	1152	Right-handed alpha
Helix 95	AK5	B	1159	1172	Right-handed alpha
Helix 96	AK6	B	1176	1189	Right-handed alpha
Helix 97	AK7	B	1192	1206	Right-handed alpha
Helix 98	AK8	B	1210	1224	Right-handed alpha
Helix 99	AK9	B	1228	1244	Right-handed alpha
Helix 100	AL1	B	1254	1266	Right-handed alpha
Helix 101	AL2	B	1269	1291	Right-handed alpha
Helix 102	AL3	B	1299	1313	Right-handed alpha
Helix 103	AL4	B	1317	1340	Right-handed alpha
Helix 104	AL5	B	1341	1356	Right-handed alpha
Helix 105	AL6	B	1361	1371	Right-handed alpha
Helix 106	AL7	B	1382	1396	Right-handed alpha
Helix 107	AL8	B	1399	1414	Right-handed alpha
Helix 108	AL9	B	1415	1434	Right-handed alpha
Helix 109	AM1	B	1436	1456	Right-handed alpha
Helix 110	AM2	B	1462	1478	Right-handed alpha
Helix 111	AM3	B	1480	1494	Right-handed alpha
Helix 112	AM4	B	1498	1511	Right-handed alpha
Helix 113	AM5	B	1515	1533	Right-handed alpha
Helix 114	AM6	B	1535	1548	Right-handed alpha
Helix 115	AM7	B	1552	1563	Right-handed alpha

There are 22 sheets in PDB entry 7QDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	30	33	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	116	117	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	475	479	parallel
Strand 3	A	327	331	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	355	359	parallel
Strand 3	A	417	422	parallel
Strand 4	A	449	452	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	507	first strand
Strand 2	A	487	492	anti-parallel
Strand 3	A	713	717	parallel
Strand 4	A	675	677	parallel
Strand 5	A	569	572	parallel
Strand 6	A	658	661	parallel
Strand 7	A	632	635	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	690	691	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	916	920	first strand
Strand 2	A	871	875	anti-parallel
Strand 3	A	853	862	anti-parallel
Strand 4	A	843	848	anti-parallel
Strand 5	A	925	928	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	739	first strand
Strand 2	B	751	753	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	11	first strand
Strand 2	C	298	302	anti-parallel
Strand 3	C	288	293	anti-parallel
Strand 4	C	277	281	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	46	49	anti-parallel
Strand 4	C	54	58	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	79	83	anti-parallel
Strand 3	C	90	91	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	122	124	anti-parallel
Strand 3	C	130	134	anti-parallel
Strand 4	C	138	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	156	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	172	175	anti-parallel
Strand 4	C	182	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	198	first strand
Strand 2	C	204	207	anti-parallel
Strand 3	C	213	218	anti-parallel
Strand 4	C	224	229	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	256	260	anti-parallel
Strand 4	C	265	270	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	298	302	anti-parallel
Strand 3	D	288	293	anti-parallel
Strand 4	D	277	282	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	34	38	anti-parallel
Strand 3	D	43	49	anti-parallel
Strand 4	D	54	61	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	79	83	anti-parallel
Strand 3	D	88	91	anti-parallel
Strand 4	D	100	102	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	122	123	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	156	first strand
Strand 2	D	163	165	anti-parallel
Strand 3	D	172	175	anti-parallel
Strand 4	D	182	186	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	197	first strand
Strand 2	D	204	208	anti-parallel
Strand 3	D	214	218	anti-parallel
Strand 4	D	224	228	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	239	first strand
Strand 2	D	246	251	anti-parallel
Strand 3	D	256	260	anti-parallel
Strand 4	D	266	270	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QDY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QDY