Analysis of interatomic Contacts of Structural Units in PDB entry:
7QE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QE0 entry

There are 2 chains in PDB entry 7QE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 282GLN 1246
E
 U 1 U 38
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 7QE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
312 324Right-handed alpha
Helix 2
AA2
A
334 352Right-handed alpha
Helix 3
AA3
A
364 377Right-handed alpha
Helix 4
AA4
A
399 404Right-handed alpha
Helix 5
AA5
A
404 409Right-handed alpha
Helix 6
AA6
A
413 415Right-handed 310
Helix 7
AA7
A
424 428Right-handed 310
Helix 8
AA8
A
433 444Right-handed alpha
Helix 9
AA9
A
463 471Right-handed alpha
Helix 10
AB1
A
514 529Right-handed alpha
Helix 11
AB2
A
547 563Right-handed alpha
Helix 12
AB3
A
575 587Right-handed alpha
Helix 13
AB4
A
593 609Right-handed alpha
Helix 14
AB5
A
613 617Right-handed 310
Helix 15
AB6
A
618 631Right-handed alpha
Helix 16
AB7
A
640 652Right-handed alpha
Helix 17
AB8
A
662 669Right-handed alpha
Helix 18
AB9
A
693 703Right-handed alpha
Helix 19
AC1
A
725 734Right-handed alpha
Helix 20
AC2
A
747 756Right-handed alpha
Helix 21
AC3
A
761 768Right-handed alpha
Helix 22
AC4
A
769 771Right-handed 310
Helix 23
AC5
A
772 777Right-handed alpha
Helix 24
AC6
A
778 794Right-handed alpha
Helix 25
AC7
A
807 831Right-handed alpha
Helix 26
AC8
A
832 839Right-handed alpha
Helix 27
AC9
A
897 902Right-handed alpha
Helix 28
AD1
A
936 948Right-handed alpha
Helix 29
AD2
A
949 953Right-handed 310
Helix 30
AD3
A
958 974Right-handed alpha
Helix 31
AD4
A
992 1010Right-handed alpha
Helix 32
AD5
A
1011 1012Right-handed 310
Helix 33
AD6
A
1013 1017Right-handed 310
Helix 34
AD7
A
1019 1045Right-handed alpha
Helix 35
AD8
A
1051 1065Right-handed alpha
Helix 36
AD9
A
1075 1083Right-handed alpha
Helix 37
AE1
A
1087 1097Right-handed alpha
Helix 38
AE2
A
1099 1103Right-handed 310
Helix 39
AE3
A
1104 1113Right-handed alpha
Helix 40
AE4
A
1114 1116Right-handed 310
Helix 41
AE5
A
1128 1151Right-handed alpha
Helix 42
AE6
A
1157 1163Right-handed alpha
Helix 43
AE7
A
1169 1177Right-handed alpha
Helix 44
AE8
A
1181 1189Right-handed alpha
Helix 45
AE9
A
1192 1205Right-handed alpha
Helix 46
AF1
A
1205 1210Right-handed alpha
Helix 47
AF2
A
1210 1218Right-handed alpha
Helix 48
AF3
A
1219 1230Right-handed alpha
Helix 49
AF4
A
1236 1240Right-handed 310
Helix 50
AF5
A
1242 1246Right-handed 310
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There are 6 sheets in PDB entry 7QE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 331first strand
Strand 2
A
475 479parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
355 359parallel
Strand 3
A
417 422parallel
Strand 4
A
449 452parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
388 389anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 507first strand
Strand 2
A
487 492anti-parallel
Strand 3
A
713 717parallel
Strand 4
A
675 677parallel
Strand 5
A
569 572parallel
Strand 6
A
658 661parallel
Strand 7
A
632 635parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
916 920first strand
Strand 2
A
871 875anti-parallel
Strand 3
A
853 862anti-parallel
Strand 4
A
843 848anti-parallel
Strand 5
A
925 932anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1068 1069first strand
Strand 2
A
1073 1074anti-parallel
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