Analysis of interatomic Contacts of Structural Units in PDB entry:
7QE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QE2 entry

There are 2 chains in PDB entry 7QE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 40	ASP 785
B	GLU 40	ASP 786

There are 63 helices in PDB entry 7QE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	77	88	Right-handed alpha
Helix 3	AA3	A	90	97	Right-handed alpha
Helix 4	AA4	A	119	127	Right-handed alpha
Helix 5	AA5	A	157	174	Right-handed alpha
Helix 6	AA6	A	211	228	Right-handed alpha
Helix 7	AA7	A	235	252	Right-handed alpha
Helix 8	AA8	A	270	276	Right-handed 310
Helix 9	AA9	A	280	297	Right-handed alpha
Helix 10	AB1	A	326	330	Right-handed 310
Helix 11	AB2	A	334	337	Right-handed 310
Helix 12	AB3	A	346	361	Right-handed alpha
Helix 13	AB4	A	390	393	Right-handed 310
Helix 14	AB5	A	394	399	Right-handed alpha
Helix 15	AB6	A	430	442	Right-handed alpha
Helix 16	AB7	A	451	461	Right-handed alpha
Helix 17	AB8	A	465	483	Right-handed alpha
Helix 18	AB9	A	492	500	Right-handed alpha
Helix 19	AC1	A	502	517	Right-handed alpha
Helix 20	AC2	A	546	553	Right-handed alpha
Helix 21	AC3	A	600	603	Right-handed 310
Helix 22	AC4	A	628	630	Right-handed 310
Helix 23	AC5	A	631	636	Right-handed alpha
Helix 24	AC6	A	647	651	Right-handed 310
Helix 25	AC7	A	656	660	Right-handed 310
Helix 26	AC8	A	664	671	Right-handed alpha
Helix 27	AC9	A	679	690	Right-handed alpha
Helix 28	AD1	A	692	694	Right-handed 310
Helix 29	AD2	A	709	717	Right-handed 310
Helix 30	AD3	A	727	736	Right-handed alpha
Helix 31	AD4	A	752	759	Right-handed alpha
Helix 32	AD5	B	69	73	Right-handed 310
Helix 33	AD6	B	77	89	Right-handed alpha
Helix 34	AD7	B	90	97	Right-handed alpha
Helix 35	AD8	B	120	127	Right-handed alpha
Helix 36	AD9	B	157	174	Right-handed alpha
Helix 37	AE1	B	211	227	Right-handed alpha
Helix 38	AE2	B	235	252	Right-handed alpha
Helix 39	AE3	B	270	276	Right-handed 310
Helix 40	AE4	B	280	296	Right-handed alpha
Helix 41	AE5	B	326	330	Right-handed 310
Helix 42	AE6	B	334	337	Right-handed 310
Helix 43	AE7	B	346	351	Right-handed alpha
Helix 44	AE8	B	351	361	Right-handed alpha
Helix 45	AE9	B	390	393	Right-handed 310
Helix 46	AF1	B	394	399	Right-handed alpha
Helix 47	AF2	B	430	441	Right-handed alpha
Helix 48	AF3	B	451	461	Right-handed alpha
Helix 49	AF4	B	465	483	Right-handed alpha
Helix 50	AF5	B	492	500	Right-handed alpha
Helix 51	AF6	B	502	517	Right-handed alpha
Helix 52	AF7	B	546	553	Right-handed alpha
Helix 53	AF8	B	600	604	Right-handed 310
Helix 54	AF9	B	626	630	Right-handed 310
Helix 55	AG1	B	631	636	Right-handed alpha
Helix 56	AG2	B	647	651	Right-handed 310
Helix 57	AG3	B	656	660	Right-handed 310
Helix 58	AG4	B	664	671	Right-handed alpha
Helix 59	AG5	B	679	690	Right-handed alpha
Helix 60	AG6	B	692	694	Right-handed 310
Helix 61	AG7	B	709	717	Right-handed 310
Helix 62	AG8	B	727	736	Right-handed alpha
Helix 63	AG9	B	752	759	Right-handed alpha

There are 21 sheets in PDB entry 7QE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	57	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	132	134	parallel
Strand 3	A	99	102	parallel
Strand 4	A	446	447	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	114	116	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	261	first strand
Strand 2	A	314	320	parallel
Strand 3	A	364	367	parallel
Strand 4	A	411	412	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	371	372	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	522	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	696	701	parallel
Strand 4	A	576	585	parallel
Strand 5	A	538	542	parallel
Strand 6	A	556	559	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	522	first strand
Strand 2	A	719	722	anti-parallel
Strand 3	A	696	701	parallel
Strand 4	A	576	585	parallel
Strand 5	A	674	677	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	528	529	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	625	626	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	617	622	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	750	first strand
Strand 2	A	773	775	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	57	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	132	134	parallel
Strand 3	B	99	102	parallel
Strand 4	B	446	447	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	114	116	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	261	first strand
Strand 2	B	314	320	parallel
Strand 3	B	364	367	parallel
Strand 4	B	411	412	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	371	372	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	522	first strand
Strand 2	B	719	722	anti-parallel
Strand 3	B	696	701	parallel
Strand 4	B	576	585	parallel
Strand 5	B	538	543	parallel
Strand 6	B	556	559	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	522	first strand
Strand 2	B	719	722	anti-parallel
Strand 3	B	696	701	parallel
Strand 4	B	576	585	parallel
Strand 5	B	674	677	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	528	529	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	611	first strand
Strand 2	B	617	622	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	750	first strand
Strand 2	B	773	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QE2