Analysis of interatomic Contacts of Structural Units in PDB entry:
7QFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QFN entry

There is 1 chain in PDB entry 7QFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 47GLY 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 7QFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 62Right-handed alpha
Helix 2
AA2
A
62 68Right-handed alpha
Helix 3
AA3
A
94 115Right-handed alpha
Helix 4
AA4
A
153 160Right-handed alpha
Helix 5
AA5
A
182 189Right-handed alpha
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
239 243Right-handed 310
Helix 8
AA8
A
248 266Right-handed alpha
Helix 9
AA9
A
282 292Right-handed alpha
Helix 10
AB1
A
340 355Right-handed alpha
Helix 11
AB2
A
368 374Right-handed alpha
Helix 12
AB3
A
400 404Right-handed 310
Helix 13
AB4
A
411 418Right-handed alpha
Helix 14
AB5
A
419 421Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7QFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
85 93anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
221 224anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
131 137anti-parallel
Strand 6
A
120 126anti-parallel
Strand 7
A
270 273parallel
Strand 8
A
276 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
151 152anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 310first strand
Strand 2
A
313 319anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
325 330parallel
Strand 5
A
333 334anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
396 397parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il