Analysis of interatomic Contacts of Structural Units in PDB entry:
7QFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QFP entry

There is 1 chain in PDB entry 7QFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 20	LYS 1269

There are 24 helices in PDB entry 7QFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	111	Right-handed alpha
Helix 2	AA2	A	118	126	Right-handed alpha
Helix 3	AA3	A	184	188	Right-handed 310
Helix 4	AA4	A	222	238	Right-handed alpha
Helix 5	AA5	A	266	273	Right-handed alpha
Helix 6	AA6	A	281	305	Right-handed alpha
Helix 7	AA7	A	313	317	Right-handed 310
Helix 8	AA8	A	318	323	Right-handed alpha
Helix 9	AA9	A	337	349	Right-handed alpha
Helix 10	AB1	A	352	360	Right-handed alpha
Helix 11	AB2	A	394	399	Right-handed alpha
Helix 12	AB3	A	535	544	Right-handed alpha
Helix 13	AB4	A	573	581	Right-handed alpha
Helix 14	AB5	A	585	587	Right-handed 310
Helix 15	AB6	A	588	605	Right-handed alpha
Helix 16	AB7	A	637	646	Right-handed alpha
Helix 17	AB8	A	676	710	Right-handed alpha
Helix 18	AB9	A	710	729	Right-handed alpha
Helix 19	AC1	A	730	742	Right-handed alpha
Helix 20	AC2	A	760	817	Right-handed alpha
Helix 21	AC3	A	830	836	Right-handed alpha
Helix 22	AC4	A	945	949	Right-handed 310
Helix 23	AC5	A	1072	1083	Right-handed alpha
Helix 24	AC6	A	1172	1176	Right-handed 310

There are 18 sheets in PDB entry 7QFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	57	58	anti-parallel
Strand 4	A	165	167	parallel
Strand 5	A	199	201	parallel
Strand 6	A	180	181	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	421	423	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	160	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	219	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	264	265	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	334	335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	413	414	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	A	880	881	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	891	first strand
Strand 2	A	915	917	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	905	906	first strand
Strand 2	A	1060	1061	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1008	1012	first strand
Strand 2	A	934	938	anti-parallel
Strand 3	A	1065	1066	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	993	first strand
Strand 2	A	975	981	anti-parallel
Strand 3	A	966	972	anti-parallel
Strand 4	A	954	958	anti-parallel
Strand 5	A	1047	1051	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1019	1024	first strand
Strand 2	A	1027	1033	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1104	1107	first strand
Strand 2	A	1257	1260	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1113	1117	first strand
Strand 2	A	1123	1128	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1168	1169	first strand
Strand 2	A	1177	1178	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1204	1209	first strand
Strand 2	A	1214	1219	anti-parallel
Strand 3	A	1225	1226	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1228	1229	first strand
Strand 2	A	1238	1239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QFP