Analysis of interatomic Contacts of Structural Units in PDB entry:
7QFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QFX entry

There are 4 chains in PDB entry 7QFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 3	PRO 417
C	LYS 2	PRO 422
E	ASP 3	LYS 416
G	ASP 3	LEU 77

There are 70 helices in PDB entry 7QFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	37	41	Right-handed 310
Helix 2	AA2	B	70	83	Right-handed alpha
Helix 3	AA3	B	96	100	Right-handed 310
Helix 4	AA4	B	113	127	Right-handed alpha
Helix 5	AA5	B	138	142	Right-handed 310
Helix 6	AA6	B	186	208	Right-handed alpha
Helix 7	AA7	B	220	227	Right-handed alpha
Helix 8	AA8	B	240	259	Right-handed alpha
Helix 9	AA9	B	284	299	Right-handed alpha
Helix 10	AB1	B	324	334	Right-handed alpha
Helix 11	AB2	B	335	339	Right-handed 310
Helix 12	AB3	B	349	359	Right-handed alpha
Helix 13	AB4	B	368	374	Right-handed alpha
Helix 14	AB5	B	376	385	Right-handed alpha
Helix 15	AB6	B	392	397	Right-handed alpha
Helix 16	AB7	B	398	400	Right-handed 310
Helix 17	AB8	C	37	41	Right-handed 310
Helix 18	AB9	C	70	83	Right-handed alpha
Helix 19	AC1	C	96	100	Right-handed 310
Helix 20	AC2	C	110	112	Right-handed 310
Helix 21	AC3	C	113	127	Right-handed alpha
Helix 22	AC4	C	138	142	Right-handed 310
Helix 23	AC5	C	186	208	Right-handed alpha
Helix 24	AC6	C	222	227	Right-handed alpha
Helix 25	AC7	C	228	231	Right-handed 310
Helix 26	AC8	C	240	245	Right-handed alpha
Helix 27	AC9	C	245	260	Right-handed alpha
Helix 28	AD1	C	284	299	Right-handed alpha
Helix 29	AD2	C	324	336	Right-handed alpha
Helix 30	AD3	C	337	339	Right-handed 310
Helix 31	AD4	C	349	359	Right-handed alpha
Helix 32	AD5	C	368	374	Right-handed alpha
Helix 33	AD6	C	376	385	Right-handed alpha
Helix 34	AD7	C	392	397	Right-handed alpha
Helix 35	AD8	C	398	400	Right-handed 310
Helix 36	AD9	E	37	41	Right-handed 310
Helix 37	AE1	E	70	82	Right-handed alpha
Helix 38	AE2	E	96	100	Right-handed 310
Helix 39	AE3	E	110	112	Right-handed 310
Helix 40	AE4	E	113	127	Right-handed alpha
Helix 41	AE5	E	138	142	Right-handed 310
Helix 42	AE6	E	186	208	Right-handed alpha
Helix 43	AE7	E	220	227	Right-handed alpha
Helix 44	AE8	E	240	245	Right-handed alpha
Helix 45	AE9	E	245	259	Right-handed alpha
Helix 46	AF1	E	284	299	Right-handed alpha
Helix 47	AF2	E	324	336	Right-handed alpha
Helix 48	AF3	E	349	359	Right-handed alpha
Helix 49	AF4	E	368	374	Right-handed alpha
Helix 50	AF5	E	376	385	Right-handed alpha
Helix 51	AF6	E	392	397	Right-handed alpha
Helix 52	AF7	E	398	400	Right-handed 310
Helix 53	AF8	G	37	41	Right-handed 310
Helix 54	AF9	G	70	82	Right-handed alpha
Helix 55	AG1	G	96	100	Right-handed 310
Helix 56	AG2	G	110	113	Right-handed 310
Helix 57	AG3	G	114	127	Right-handed alpha
Helix 58	AG4	G	138	142	Right-handed 310
Helix 59	AG5	G	157	161	Right-handed 310
Helix 60	AG6	G	186	208	Right-handed alpha
Helix 61	AG7	G	220	226	Right-handed alpha
Helix 62	AG8	G	240	259	Right-handed alpha
Helix 63	AG9	G	284	299	Right-handed alpha
Helix 64	AH1	G	325	333	Right-handed alpha
Helix 65	AH2	G	335	339	Right-handed 310
Helix 66	AH3	G	349	359	Right-handed alpha
Helix 67	AH4	G	368	374	Right-handed alpha
Helix 68	AH5	G	376	386	Right-handed alpha
Helix 69	AH6	G	392	397	Right-handed alpha
Helix 70	AH7	G	398	400	Right-handed 310

There are 14 sheets in PDB entry 7QFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	48	50	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	87	94	parallel
Strand 3	B	130	136	parallel
Strand 4	B	212	216	parallel
Strand 5	B	265	270	parallel
Strand 6	B	303	307	parallel
Strand 7	B	340	344	parallel
Strand 8	B	364	367	parallel
Strand 9	B	54	56	parallel
Strand 10	B	87	94	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	183	184	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	409	410	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	49	50	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	87	94	parallel
Strand 3	C	131	136	parallel
Strand 4	C	212	216	parallel
Strand 5	C	265	270	parallel
Strand 6	C	303	307	parallel
Strand 7	C	340	344	parallel
Strand 8	C	364	367	parallel
Strand 9	C	54	56	parallel
Strand 10	C	87	94	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	183	184	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	409	410	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	45	first strand
Strand 2	E	48	50	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	56	first strand
Strand 2	E	87	94	parallel
Strand 3	E	130	136	parallel
Strand 4	E	211	216	parallel
Strand 5	E	265	270	parallel
Strand 6	E	303	307	parallel
Strand 7	E	340	344	parallel
Strand 8	E	364	367	parallel
Strand 9	E	54	56	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	183	184	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	45	first strand
Strand 2	G	48	50	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	56	first strand
Strand 2	G	87	94	parallel
Strand 3	G	131	136	parallel
Strand 4	G	212	215	parallel
Strand 5	G	265	270	parallel
Strand 6	G	303	307	parallel
Strand 7	G	341	343	parallel
Strand 8	G	364	367	parallel
Strand 9	G	54	56	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	389	390	first strand
Strand 2	G	409	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QFX