Analysis of interatomic Contacts of Structural Units in PDB entry:
7QGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QGW entry

There are 2 chains in PDB entry 7QGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1VAL 221
B
 LEU 223VAL 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7QGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
24 43Right-handed alpha
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
63 67Right-handed 310
Helix 5
AA5
A
69 81Right-handed alpha
Helix 6
AA6
A
101 103Right-handed 310
Helix 7
AA7
A
119 130Right-handed alpha
Helix 8
AA8
A
141 146Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
B
230 233Right-handed 310
Helix 11
AB2
B
246 265Right-handed alpha
Helix 12
AB3
B
271 279Right-handed alpha
Helix 13
AB4
B
280 283Right-handed 310
Helix 14
AB5
B
285 289Right-handed 310
Helix 15
AB6
B
291 303Right-handed alpha
Helix 16
AB7
B
323 325Right-handed 310
Helix 17
AB8
B
341 352Right-handed alpha
Helix 18
AB9
B
363 368Right-handed alpha
Helix 19
AC1
B
430 434Right-handed 310
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There are 8 sheets in PDB entry 7QGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
133 137anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
183 187anti-parallel
Strand 4
A
199 203anti-parallel
Strand 5
A
151 152parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
105 107anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
217 219anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
386 395anti-parallel
Strand 3
B
355 359anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
386 395anti-parallel
Strand 3
B
404 409anti-parallel
Strand 4
B
421 425anti-parallel
Strand 5
B
373 374parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
327 329anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
439 441anti-parallel
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