Analysis of interatomic Contacts of Structural Units in PDB entry:
7QI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QI8 entry

There is 1 chain in PDB entry 7QI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12ILE 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7QI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
41 49Right-handed alpha
Helix 3
AA3
A
100 111Right-handed alpha
Helix 4
AA4
A
156 161Right-handed alpha
Helix 5
AA5
A
163 171Right-handed alpha
Helix 6
AA6
A
171 195Right-handed alpha
Helix 7
AA7
A
234 244Right-handed alpha
Helix 8
AA8
A
280 301Right-handed alpha
Helix 9
AA9
A
324 333Right-handed alpha
Helix 10
AB1
A
341 353Right-handed alpha
Helix 11
AB2
A
367 380Right-handed alpha
Helix 12
AB3
A
381 384Right-handed 310
Helix 13
AB4
A
396 398Right-handed 310
Helix 14
AB5
A
432 446Right-handed alpha
Helix 15
AB6
A
458 467Right-handed alpha
Helix 16
AB7
A
479 488Right-handed alpha
Helix 17
AB8
A
490 495Right-handed alpha
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There are 4 sheets in PDB entry 7QI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
115 125anti-parallel
Strand 3
A
131 135anti-parallel
Strand 4
A
89 95parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
57 73anti-parallel
Strand 7
A
115 125anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
248 256parallel
Strand 3
A
268 277anti-parallel
Strand 4
A
472 478anti-parallel
Strand 5
A
421 428anti-parallel
Strand 6
A
410 418anti-parallel
Strand 7
A
388 394anti-parallel
Strand 8
A
320 323parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
227 230anti-parallel
Strand 3
A
218 220anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 306first strand
Strand 2
A
312 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il