Analysis of interatomic Contacts of Structural Units in PDB entry:
7QIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QIC entry

There are 3 chains in PDB entry 7QIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 38ILE 438
C
 GLN 1VAL 117
B
 GLN 3VAL 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7QIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 43Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
57 70Right-handed alpha
Helix 4
AA4
A
71 74Right-handed 310
Helix 5
AA5
A
75 99Right-handed alpha
Helix 6
AA6
A
101 110Right-handed alpha
Helix 7
AA7
A
111 144Right-handed alpha
Helix 8
AA8
A
151 165Right-handed alpha
Helix 9
AA9
A
169 179Right-handed alpha
Helix 10
AB1
A
180 192Right-handed alpha
Helix 11
AB2
A
195 202Right-handed alpha
Helix 12
AB3
A
211 227Right-handed alpha
Helix 13
AB4
A
228 242Right-handed alpha
Helix 14
AB5
A
247 277Right-handed alpha
Helix 15
AB6
A
286 292Right-handed alpha
Helix 16
AB7
A
294 299Right-handed alpha
Helix 17
AB8
A
301 333Right-handed alpha
Helix 18
AB9
A
342 345Right-handed 310
Helix 19
AC1
A
346 364Right-handed alpha
Helix 20
AC2
A
370 385Right-handed alpha
Helix 21
AC3
A
385 399Right-handed alpha
Helix 22
AC4
A
399 404Right-handed alpha
Helix 23
AC5
A
409 437Right-handed alpha
Helix 24
AC6
B
108 112Right-handed 310
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There are 5 sheets in PDB entry 7QIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
96 98anti-parallel
Strand 3
C
108 109anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 93first strand
Strand 2
C
113 115anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
82 84anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
35 38anti-parallel
Strand 4
B
94 98anti-parallel
Strand 5
B
114 115anti-parallel
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