Analysis of interatomic Contacts of Structural Units in PDB entry:
7QID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QID entry

There are 10 chains in PDB entry 7QID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 1	SER 719
B	SER 724	LYS 917
C	HIS 1	SER 719
D	SER 724	LYS 917
E	GLY 1	ASN 21
F	PHE 1	THR 30
K	GLY 1	ASN 21
L	PHE 1	THR 30
I	GLY 1	ASN 21
J	PHE 1	THR 30

There are 34 helices in PDB entry 7QID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed 310
Helix 2	AA2	A	42	47	Right-handed alpha
Helix 3	AA3	A	193	199	Right-handed alpha
Helix 4	AA4	A	255	264	Right-handed alpha
Helix 5	AA5	A	323	328	Right-handed alpha
Helix 6	AA6	A	350	358	Right-handed alpha
Helix 7	AA7	A	436	445	Right-handed alpha
Helix 8	AA8	A	496	500	Right-handed 310
Helix 9	AA9	A	638	644	Right-handed alpha
Helix 10	AB1	A	692	700	Right-handed alpha
Helix 11	AB2	A	701	703	Right-handed 310
Helix 12	AB3	A	704	712	Right-handed alpha
Helix 13	AB4	B	862	870	Right-handed alpha
Helix 14	AB5	C	43	47	Right-handed 310
Helix 15	AB6	C	87	91	Right-handed 310
Helix 16	AB7	C	149	153	Right-handed 310
Helix 17	AB8	C	257	259	Right-handed 310
Helix 18	AB9	C	260	265	Right-handed alpha
Helix 19	AC1	C	314	316	Right-handed 310
Helix 20	AC2	C	323	329	Right-handed alpha
Helix 21	AC3	C	351	358	Right-handed alpha
Helix 22	AC4	C	394	398	Right-handed 310
Helix 23	AC5	C	436	447	Right-handed alpha
Helix 24	AC6	C	638	643	Right-handed alpha
Helix 25	AC7	C	659	663	Right-handed 310
Helix 26	AC8	C	674	679	Right-handed 310
Helix 27	AC9	C	691	711	Right-handed alpha
Helix 28	AD1	D	862	870	Right-handed alpha
Helix 29	AD2	E	2	7	Right-handed alpha
Helix 30	AD3	F	8	20	Right-handed alpha
Helix 31	AD4	K	12	18	Right-handed alpha
Helix 32	AD5	L	9	20	Right-handed alpha
Helix 33	AD6	I	12	17	Right-handed alpha
Helix 34	AD7	J	8	18	Right-handed alpha

There are 36 sheets in PDB entry 7QID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	29	30	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	33	38	parallel
Strand 3	A	61	66	parallel
Strand 4	A	93	98	parallel
Strand 5	A	117	120	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	81	82	parallel
Strand 3	A	111	112	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	177	180	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	206	207	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	236	238	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	246	248	anti-parallel
Strand 3	A	283	286	parallel
Strand 4	A	277	279	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	295	first strand
Strand 2	A	300	303	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	363	364	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	368	373	parallel
Strand 3	A	398	405	parallel
Strand 4	A	425	429	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	485	489	anti-parallel
Strand 3	A	550	552	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	534	first strand
Strand 2	A	503	508	anti-parallel
Strand 3	A	562	566	anti-parallel
Strand 4	A	586	588	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	603	first strand
Strand 2	A	613	614	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	631	first strand
Strand 2	B	778	784	anti-parallel
Strand 3	B	799	804	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	847	849	first strand
Strand 2	B	857	859	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	28	29	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	35	36	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	93	95	parallel
Strand 3	C	117	119	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	178	179	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	184	first strand
Strand 2	C	187	188	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	236	238	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	252	255	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	283	285	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	294	first strand
Strand 2	C	301	303	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	333	336	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	321	first strand
Strand 2	C	339	343	parallel
Strand 3	C	368	371	parallel
Strand 4	C	400	403	parallel
Strand 5	C	427	429	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	387	388	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	473	first strand
Strand 2	C	581	583	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	479	first strand
Strand 2	C	485	488	anti-parallel
Strand 3	C	550	553	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	503	507	anti-parallel
Strand 3	C	561	568	anti-parallel
Strand 4	C	586	589	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	599	604	first strand
Strand 2	C	612	616	anti-parallel
Strand 3	D	767	768	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	760	761	first strand
Strand 2	C	627	629	anti-parallel
Strand 3	D	784	786	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	779	782	first strand
Strand 2	D	800	803	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	818	823	first strand
Strand 2	D	827	832	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	844	846	first strand
Strand 2	D	887	889	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	880	883	first strand
Strand 2	D	902	905	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QID

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QID