Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QJ1 entry

There are 16 chains in PDB entry 7QJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
l	ALA 13	PRO 130
m	ALA 11	LYS 75
b	ALA 11	LYS 75
a	LYS 7	THR 129
G	LEU 150	LEU 872
H	ILE 245	GLU 890
I	MET 1	SER 631
J	PRO 210	SER 1016
K	MET 1	GLN 657
L	LEU 282	TYR 1807
U	ARG 3	GLY 447
V	ARG 3	GLY 447
W	ARG 3	GLY 447
X	ARG 3	GLY 447
Y	ARG 3	GLY 447
Z	ARG 3	GLY 447

There are254 helices in PDB entry 7QJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	l	13	28	Right-handed alpha
Helix 2	AA2	l	34	50	Right-handed alpha
Helix 3	AA3	l	57	75	Right-handed alpha
Helix 4	AA4	l	77	92	Right-handed alpha
Helix 5	AA5	l	106	118	Right-handed alpha
Helix 6	AA6	m	12	34	Right-handed alpha
Helix 7	AA7	m	40	54	Right-handed alpha
Helix 8	AA8	m	56	68	Right-handed alpha
Helix 9	AA9	m	69	71	Right-handed 310
Helix 10	AB1	b	12	34	Right-handed alpha
Helix 11	AB2	b	40	54	Right-handed alpha
Helix 12	AB3	b	56	68	Right-handed alpha
Helix 13	AB4	b	69	71	Right-handed 310
Helix 14	AB5	a	8	21	Right-handed alpha
Helix 15	AB6	a	29	40	Right-handed alpha
Helix 16	AB7	a	50	65	Right-handed alpha
Helix 17	AB8	a	67	85	Right-handed alpha
Helix 18	AB9	a	89	100	Right-handed alpha
Helix 19	AC1	G	152	168	Right-handed alpha
Helix 20	AC2	G	179	184	Right-handed alpha
Helix 21	AC3	G	204	208	Right-handed 310
Helix 22	AC4	G	209	226	Right-handed alpha
Helix 23	AC5	G	253	262	Right-handed alpha
Helix 24	AC6	G	264	280	Right-handed alpha
Helix 25	AC7	G	285	316	Right-handed alpha
Helix 26	AC8	G	320	328	Right-handed alpha
Helix 27	AC9	G	328	349	Right-handed alpha
Helix 28	AD1	G	353	366	Right-handed alpha
Helix 29	AD2	G	371	384	Right-handed alpha
Helix 30	AD3	G	384	397	Right-handed alpha
Helix 31	AD4	G	435	439	Right-handed 310
Helix 32	AD5	G	446	462	Right-handed alpha
Helix 33	AD6	G	483	504	Right-handed alpha
Helix 34	AD7	G	509	518	Right-handed alpha
Helix 35	AD8	G	524	540	Right-handed alpha
Helix 36	AD9	G	547	562	Right-handed alpha
Helix 37	AE1	G	563	567	Right-handed 310
Helix 38	AE2	G	581	585	Right-handed 310
Helix 39	AE3	G	631	661	Right-handed alpha
Helix 40	AE4	G	677	701	Right-handed alpha
Helix 41	AE5	G	701	713	Right-handed alpha
Helix 42	AE6	G	714	716	Right-handed 310
Helix 43	AE7	G	718	737	Right-handed alpha
Helix 44	AE8	G	745	771	Right-handed alpha
Helix 45	AE9	G	816	842	Right-handed alpha
Helix 46	AF1	G	853	860	Right-handed alpha
Helix 47	AF2	H	246	258	Right-handed alpha
Helix 48	AF3	H	286	311	Right-handed alpha
Helix 49	AF4	H	318	345	Right-handed alpha
Helix 50	AF5	H	367	388	Right-handed alpha
Helix 51	AF6	H	393	402	Right-handed alpha
Helix 52	AF7	H	403	405	Right-handed 310
Helix 53	AF8	H	408	436	Right-handed alpha
Helix 54	AF9	H	458	463	Right-handed alpha
Helix 55	AG1	H	476	496	Right-handed alpha
Helix 56	AG2	H	529	553	Right-handed alpha
Helix 57	AG3	H	554	565	Right-handed alpha
Helix 58	AG4	H	571	581	Right-handed alpha
Helix 59	AG5	H	581	586	Right-handed alpha
Helix 60	AG6	H	588	592	Right-handed 310
Helix 61	AG7	H	593	608	Right-handed alpha
Helix 62	AG8	H	609	613	Right-handed 310
Helix 63	AG9	H	614	620	Right-handed alpha
Helix 64	AH1	H	647	651	Right-handed 310
Helix 65	AH2	H	653	688	Right-handed alpha
Helix 66	AH3	H	697	722	Right-handed alpha
Helix 67	AH4	H	728	740	Right-handed alpha
Helix 68	AH5	H	743	762	Right-handed alpha
Helix 69	AH6	H	768	811	Right-handed alpha
Helix 70	AH7	H	828	865	Right-handed alpha
Helix 71	AH8	H	871	881	Right-handed alpha
Helix 72	AH9	H	884	888	Right-handed 310
Helix 73	AI1	I	3	9	Right-handed alpha
Helix 74	AI2	I	37	62	Right-handed alpha
Helix 75	AI3	I	85	112	Right-handed alpha
Helix 76	AI4	I	118	126	Right-handed alpha
Helix 77	AI5	I	128	146	Right-handed alpha
Helix 78	AI6	I	152	163	Right-handed alpha
Helix 79	AI7	I	165	193	Right-handed alpha
Helix 80	AI8	I	269	285	Right-handed alpha
Helix 81	AI9	I	303	317	Right-handed alpha
Helix 82	AJ1	I	321	345	Right-handed alpha
Helix 83	AJ2	I	349	362	Right-handed alpha
Helix 84	AJ3	I	367	375	Right-handed alpha
Helix 85	AJ4	I	387	401	Right-handed alpha
Helix 86	AJ5	I	468	496	Right-handed alpha
Helix 87	AJ6	I	518	551	Right-handed alpha
Helix 88	AJ7	I	553	572	Right-handed alpha
Helix 89	AJ8	I	577	600	Right-handed alpha
Helix 90	AJ9	I	608	626	Right-handed alpha
Helix 91	AK1	I	626	631	Right-handed alpha
Helix 92	AK2	J	211	220	Right-handed alpha
Helix 93	AK3	J	241	253	Right-handed alpha
Helix 94	AK4	J	266	280	Right-handed alpha
Helix 95	AK5	J	308	336	Right-handed alpha
Helix 96	AK6	J	360	388	Right-handed alpha
Helix 97	AK7	J	394	402	Right-handed alpha
Helix 98	AK8	J	402	416	Right-handed alpha
Helix 99	AK9	J	428	448	Right-handed alpha
Helix 100	AL1	J	456	482	Right-handed alpha
Helix 101	AL2	J	552	554	Right-handed 310
Helix 102	AL3	J	555	571	Right-handed alpha
Helix 103	AL4	J	638	646	Right-handed alpha
Helix 104	AL5	J	691	712	Right-handed alpha
Helix 105	AL6	J	715	724	Right-handed alpha
Helix 106	AL7	J	735	744	Right-handed alpha
Helix 107	AL8	J	756	764	Right-handed alpha
Helix 108	AL9	J	814	840	Right-handed alpha
Helix 109	AM1	J	881	905	Right-handed alpha
Helix 110	AM2	J	907	918	Right-handed alpha
Helix 111	AM3	J	922	941	Right-handed alpha
Helix 112	AM4	J	950	958	Right-handed alpha
Helix 113	AM5	J	958	967	Right-handed alpha
Helix 114	AM6	J	980	999	Right-handed alpha
Helix 115	AM7	J	1000	1001	Right-handed 310
Helix 116	AM8	J	1007	1012	Right-handed 310
Helix 117	AM9	K	2	10	Right-handed alpha
Helix 118	AN1	K	35	63	Right-handed alpha
Helix 119	AN2	K	83	97	Right-handed alpha
Helix 120	AN3	K	97	114	Right-handed alpha
Helix 121	AN4	K	118	127	Right-handed alpha
Helix 122	AN5	K	128	147	Right-handed alpha
Helix 123	AN6	K	151	161	Right-handed alpha
Helix 124	AN7	K	165	191	Right-handed alpha
Helix 125	AN8	K	269	288	Right-handed alpha
Helix 126	AN9	K	303	317	Right-handed alpha
Helix 127	AO1	K	321	347	Right-handed alpha
Helix 128	AO2	K	349	362	Right-handed alpha
Helix 129	AO3	K	365	376	Right-handed alpha
Helix 130	AO4	K	376	382	Right-handed alpha
Helix 131	AO5	K	387	403	Right-handed alpha
Helix 132	AO6	K	448	451	Right-handed 310
Helix 133	AO7	K	468	502	Right-handed alpha
Helix 134	AO8	K	510	550	Right-handed alpha
Helix 135	AO9	K	553	572	Right-handed alpha
Helix 136	AP1	K	576	598	Right-handed alpha
Helix 137	AP2	K	607	631	Right-handed alpha
Helix 138	AP3	K	638	649	Right-handed alpha
Helix 139	AP4	K	650	652	Right-handed 310
Helix 140	AP5	L	285	289	Right-handed 310
Helix 141	AP6	L	318	336	Right-handed alpha
Helix 142	AP7	L	349	360	Right-handed alpha
Helix 143	AP8	L	392	412	Right-handed alpha
Helix 144	AP9	L	413	415	Right-handed 310
Helix 145	AQ1	L	426	447	Right-handed alpha
Helix 146	AQ2	L	455	466	Right-handed alpha
Helix 147	AQ3	L	466	477	Right-handed alpha
Helix 148	AQ4	L	498	503	Right-handed alpha
Helix 149	AQ5	L	503	512	Right-handed alpha
Helix 150	AQ6	L	516	529	Right-handed alpha
Helix 151	AQ7	L	529	540	Right-handed alpha
Helix 152	AQ8	L	588	606	Right-handed alpha
Helix 153	AQ9	L	1481	1504	Right-handed alpha
Helix 154	AR1	L	1504	1516	Right-handed alpha
Helix 155	AR2	L	1523	1535	Right-handed alpha
Helix 156	AR3	L	1549	1560	Right-handed alpha
Helix 157	AR4	L	1566	1570	Right-handed 310
Helix 158	AR5	L	1601	1606	Right-handed alpha
Helix 159	AR6	L	1611	1642	Right-handed alpha
Helix 160	AR7	L	1652	1680	Right-handed alpha
Helix 161	AR8	L	1699	1715	Right-handed alpha
Helix 162	AR9	L	1722	1742	Right-handed alpha
Helix 163	AS1	L	1761	1789	Right-handed alpha
Helix 164	AS2	L	1795	1802	Right-handed alpha
Helix 165	AS3	U	11	29	Right-handed alpha
Helix 166	AS4	U	72	79	Right-handed alpha
Helix 167	AS5	U	80	85	Right-handed 310
Helix 168	AS6	U	103	114	Right-handed alpha
Helix 169	AS7	U	114	129	Right-handed alpha
Helix 170	AS8	U	148	161	Right-handed alpha
Helix 171	AS9	U	183	199	Right-handed alpha
Helix 172	AT1	U	206	218	Right-handed alpha
Helix 173	AT2	U	223	245	Right-handed alpha
Helix 174	AT3	U	252	261	Right-handed alpha
Helix 175	AT4	U	289	299	Right-handed alpha
Helix 176	AT5	U	329	344	Right-handed alpha
Helix 177	AT6	U	383	402	Right-handed alpha
Helix 178	AT7	U	408	415	Right-handed alpha
Helix 179	AT8	U	418	440	Right-handed alpha
Helix 180	AT9	V	11	29	Right-handed alpha
Helix 181	AU1	V	72	79	Right-handed alpha
Helix 182	AU2	V	80	85	Right-handed 310
Helix 183	AU3	V	103	114	Right-handed alpha
Helix 184	AU4	V	114	129	Right-handed alpha
Helix 185	AU5	V	148	161	Right-handed alpha
Helix 186	AU6	V	183	199	Right-handed alpha
Helix 187	AU7	V	206	218	Right-handed alpha
Helix 188	AU8	V	223	245	Right-handed alpha
Helix 189	AU9	V	252	261	Right-handed alpha
Helix 190	AV1	V	289	299	Right-handed alpha
Helix 191	AV2	V	329	344	Right-handed alpha
Helix 192	AV3	V	383	402	Right-handed alpha
Helix 193	AV4	V	408	415	Right-handed alpha
Helix 194	AV5	V	418	440	Right-handed alpha
Helix 195	AV6	W	11	29	Right-handed alpha
Helix 196	AV7	W	72	79	Right-handed alpha
Helix 197	AV8	W	80	85	Right-handed 310
Helix 198	AV9	W	103	114	Right-handed alpha
Helix 199	AW1	W	114	129	Right-handed alpha
Helix 200	AW2	W	148	161	Right-handed alpha
Helix 201	AW3	W	183	199	Right-handed alpha
Helix 202	AW4	W	206	218	Right-handed alpha
Helix 203	AW5	W	223	245	Right-handed alpha
Helix 204	AW6	W	252	261	Right-handed alpha
Helix 205	AW7	W	289	299	Right-handed alpha
Helix 206	AW8	W	329	344	Right-handed alpha
Helix 207	AW9	W	383	402	Right-handed alpha
Helix 208	AX1	W	408	415	Right-handed alpha
Helix 209	AX2	W	418	440	Right-handed alpha
Helix 210	AX3	X	11	29	Right-handed alpha
Helix 211	AX4	X	72	79	Right-handed alpha
Helix 212	AX5	X	80	85	Right-handed 310
Helix 213	AX6	X	103	114	Right-handed alpha
Helix 214	AX7	X	114	129	Right-handed alpha
Helix 215	AX8	X	148	161	Right-handed alpha
Helix 216	AX9	X	183	199	Right-handed alpha
Helix 217	AY1	X	206	218	Right-handed alpha
Helix 218	AY2	X	223	245	Right-handed alpha
Helix 219	AY3	X	252	261	Right-handed alpha
Helix 220	AY4	X	289	299	Right-handed alpha
Helix 221	AY5	X	329	344	Right-handed alpha
Helix 222	AY6	X	383	402	Right-handed alpha
Helix 223	AY7	X	408	415	Right-handed alpha
Helix 224	AY8	X	418	440	Right-handed alpha
Helix 225	AY9	Y	11	29	Right-handed alpha
Helix 226	AZ1	Y	72	79	Right-handed alpha
Helix 227	AZ2	Y	80	85	Right-handed 310
Helix 228	AZ3	Y	103	114	Right-handed alpha
Helix 229	AZ4	Y	114	129	Right-handed alpha
Helix 230	AZ5	Y	148	161	Right-handed alpha
Helix 231	AZ6	Y	183	199	Right-handed alpha
Helix 232	AZ7	Y	206	218	Right-handed alpha
Helix 233	AZ8	Y	223	245	Right-handed alpha
Helix 234	AZ9	Y	252	261	Right-handed alpha
Helix 235	BA1	Y	289	299	Right-handed alpha
Helix 236	BA2	Y	329	344	Right-handed alpha
Helix 237	BA3	Y	383	402	Right-handed alpha
Helix 238	BA4	Y	408	415	Right-handed alpha
Helix 239	BA5	Y	418	440	Right-handed alpha
Helix 240	BA6	Z	11	29	Right-handed alpha
Helix 241	BA7	Z	72	79	Right-handed alpha
Helix 242	BA8	Z	80	85	Right-handed 310
Helix 243	BA9	Z	103	114	Right-handed alpha
Helix 244	BB1	Z	114	129	Right-handed alpha
Helix 245	BB2	Z	148	161	Right-handed alpha
Helix 246	BB3	Z	183	199	Right-handed alpha
Helix 247	BB4	Z	206	218	Right-handed alpha
Helix 248	BB5	Z	223	245	Right-handed alpha
Helix 249	BB6	Z	252	261	Right-handed alpha
Helix 250	BB7	Z	289	299	Right-handed alpha
Helix 251	BB8	Z	329	344	Right-handed alpha
Helix 252	BB9	Z	383	402	Right-handed alpha
Helix 253	BC1	Z	408	415	Right-handed alpha
Helix 254	BC2	Z	418	440	Right-handed alpha

There are 22 sheets in PDB entry 7QJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	233	235	first strand
Strand 2	G	246	248	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	410	411	first strand
Strand 2	G	432	433	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	573	576	first strand
Strand 2	G	617	620	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	276	277	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	448	450	first strand
Strand 2	H	464	466	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	621	624	first strand
Strand 2	H	639	642	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	412	416	first strand
Strand 2	I	453	457	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	414	418	first strand
Strand 2	K	453	457	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	554	555	first strand
Strand 2	L	572	573	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1572	1576	first strand
Strand 2	L	1594	1598	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	66	first strand
Strand 2	U	5	9	parallel
Strand 3	U	134	140	parallel
Strand 4	U	165	171	parallel
Strand 5	U	201	204	parallel
Strand 6	U	268	273	parallel
Strand 7	U	374	381	anti-parallel
Strand 8	U	317	325	anti-parallel
Strand 9	U	357	361	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	52	53	first strand
Strand 2	U	61	62	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	64	66	first strand
Strand 2	V	5	9	parallel
Strand 3	V	134	140	parallel
Strand 4	V	165	171	parallel
Strand 5	V	201	204	parallel
Strand 6	V	268	273	parallel
Strand 7	V	374	381	anti-parallel
Strand 8	V	317	325	anti-parallel
Strand 9	V	357	361	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	52	53	first strand
Strand 2	V	61	62	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	64	66	first strand
Strand 2	W	5	9	parallel
Strand 3	W	134	140	parallel
Strand 4	W	165	171	parallel
Strand 5	W	201	204	parallel
Strand 6	W	268	273	parallel
Strand 7	W	374	381	anti-parallel
Strand 8	W	317	325	anti-parallel
Strand 9	W	357	361	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	52	53	first strand
Strand 2	W	61	62	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	64	66	first strand
Strand 2	X	5	9	parallel
Strand 3	X	134	140	parallel
Strand 4	X	165	171	parallel
Strand 5	X	201	204	parallel
Strand 6	X	268	273	parallel
Strand 7	X	374	381	anti-parallel
Strand 8	X	317	325	anti-parallel
Strand 9	X	357	361	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	52	53	first strand
Strand 2	X	61	62	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	64	66	first strand
Strand 2	Y	5	9	parallel
Strand 3	Y	134	140	parallel
Strand 4	Y	165	171	parallel
Strand 5	Y	201	204	parallel
Strand 6	Y	268	273	parallel
Strand 7	Y	374	381	anti-parallel
Strand 8	Y	317	325	anti-parallel
Strand 9	Y	357	361	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	52	53	first strand
Strand 2	Y	61	62	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	64	66	first strand
Strand 2	Z	5	9	parallel
Strand 3	Z	134	140	parallel
Strand 4	Z	165	171	parallel
Strand 5	Z	201	204	parallel
Strand 6	Z	268	273	parallel
Strand 7	Z	374	381	anti-parallel
Strand 8	Z	317	325	anti-parallel
Strand 9	Z	357	361	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	52	53	first strand
Strand 2	Z	61	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJ1