Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QJE entry

There are 8 chains in PDB entry 7QJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	MET 1	SER 631
J	PRO 210	SER 1016
K	MET 1	GLN 657
L	LEU 282	TYR 1807
W	ARG 3	GLY 447
X	ARG 3	GLY 447
Y	ARG 3	GLY 447
Z	ARG 3	GLY 447

There are152 helices in PDB entry 7QJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	3	10	Right-handed alpha
Helix 2	AA2	I	36	62	Right-handed alpha
Helix 3	AA3	I	83	114	Right-handed alpha
Helix 4	AA4	I	118	126	Right-handed alpha
Helix 5	AA5	I	128	146	Right-handed alpha
Helix 6	AA6	I	150	159	Right-handed alpha
Helix 7	AA7	I	165	193	Right-handed alpha
Helix 8	AA8	I	269	285	Right-handed alpha
Helix 9	AA9	I	303	317	Right-handed alpha
Helix 10	AB1	I	321	347	Right-handed alpha
Helix 11	AB2	I	349	361	Right-handed alpha
Helix 12	AB3	I	365	375	Right-handed alpha
Helix 13	AB4	I	377	381	Right-handed 310
Helix 14	AB5	I	387	403	Right-handed alpha
Helix 15	AB6	I	468	496	Right-handed alpha
Helix 16	AB7	I	496	502	Right-handed alpha
Helix 17	AB8	I	514	516	Right-handed 310
Helix 18	AB9	I	517	551	Right-handed alpha
Helix 19	AC1	I	553	572	Right-handed alpha
Helix 20	AC2	I	577	599	Right-handed alpha
Helix 21	AC3	I	608	630	Right-handed alpha
Helix 22	AC4	J	211	220	Right-handed alpha
Helix 23	AC5	J	242	253	Right-handed alpha
Helix 24	AC6	J	266	280	Right-handed alpha
Helix 25	AC7	J	303	307	Right-handed 310
Helix 26	AC8	J	308	333	Right-handed alpha
Helix 27	AC9	J	360	388	Right-handed alpha
Helix 28	AD1	J	394	402	Right-handed alpha
Helix 29	AD2	J	402	418	Right-handed alpha
Helix 30	AD3	J	428	447	Right-handed alpha
Helix 31	AD4	J	456	467	Right-handed alpha
Helix 32	AD5	J	469	482	Right-handed alpha
Helix 33	AD6	J	552	555	Right-handed 310
Helix 34	AD7	J	556	571	Right-handed alpha
Helix 35	AD8	J	638	648	Right-handed alpha
Helix 36	AD9	J	687	711	Right-handed alpha
Helix 37	AE1	J	715	727	Right-handed alpha
Helix 38	AE2	J	734	743	Right-handed alpha
Helix 39	AE3	J	754	763	Right-handed alpha
Helix 40	AE4	J	806	811	Right-handed alpha
Helix 41	AE5	J	815	839	Right-handed alpha
Helix 42	AE6	J	881	892	Right-handed alpha
Helix 43	AE7	J	892	903	Right-handed alpha
Helix 44	AE8	J	907	919	Right-handed alpha
Helix 45	AE9	J	922	941	Right-handed alpha
Helix 46	AF1	J	950	968	Right-handed alpha
Helix 47	AF2	J	980	998	Right-handed alpha
Helix 48	AF3	J	1010	1015	Right-handed alpha
Helix 49	AF4	K	3	10	Right-handed alpha
Helix 50	AF5	K	36	62	Right-handed alpha
Helix 51	AF6	K	83	114	Right-handed alpha
Helix 52	AF7	K	118	126	Right-handed alpha
Helix 53	AF8	K	128	146	Right-handed alpha
Helix 54	AF9	K	150	159	Right-handed alpha
Helix 55	AG1	K	165	193	Right-handed alpha
Helix 56	AG2	K	269	288	Right-handed alpha
Helix 57	AG3	K	303	317	Right-handed alpha
Helix 58	AG4	K	321	347	Right-handed alpha
Helix 59	AG5	K	349	361	Right-handed alpha
Helix 60	AG6	K	365	375	Right-handed alpha
Helix 61	AG7	K	377	381	Right-handed 310
Helix 62	AG8	K	387	403	Right-handed alpha
Helix 63	AG9	K	468	496	Right-handed alpha
Helix 64	AH1	K	497	502	Right-handed alpha
Helix 65	AH2	K	514	516	Right-handed 310
Helix 66	AH3	K	517	551	Right-handed alpha
Helix 67	AH4	K	553	572	Right-handed alpha
Helix 68	AH5	K	577	599	Right-handed alpha
Helix 69	AH6	K	608	630	Right-handed alpha
Helix 70	AH7	K	640	644	Right-handed 310
Helix 71	AH8	L	283	290	Right-handed alpha
Helix 72	AH9	L	319	335	Right-handed alpha
Helix 73	AI1	L	349	362	Right-handed alpha
Helix 74	AI2	L	392	412	Right-handed alpha
Helix 75	AI3	L	413	415	Right-handed 310
Helix 76	AI4	L	426	447	Right-handed alpha
Helix 77	AI5	L	455	477	Right-handed alpha
Helix 78	AI6	L	498	512	Right-handed alpha
Helix 79	AI7	L	517	529	Right-handed alpha
Helix 80	AI8	L	529	542	Right-handed alpha
Helix 81	AI9	L	588	607	Right-handed alpha
Helix 82	AJ1	L	1481	1504	Right-handed alpha
Helix 83	AJ2	L	1504	1517	Right-handed alpha
Helix 84	AJ3	L	1523	1532	Right-handed alpha
Helix 85	AJ4	L	1549	1560	Right-handed alpha
Helix 86	AJ5	L	1601	1605	Right-handed 310
Helix 87	AJ6	L	1611	1642	Right-handed alpha
Helix 88	AJ7	L	1652	1680	Right-handed alpha
Helix 89	AJ8	L	1699	1715	Right-handed alpha
Helix 90	AJ9	L	1722	1742	Right-handed alpha
Helix 91	AK1	L	1761	1789	Right-handed alpha
Helix 92	AK2	L	1795	1803	Right-handed alpha
Helix 93	AK3	W	11	29	Right-handed alpha
Helix 94	AK4	W	73	79	Right-handed alpha
Helix 95	AK5	W	103	114	Right-handed alpha
Helix 96	AK6	W	114	129	Right-handed alpha
Helix 97	AK7	W	148	161	Right-handed alpha
Helix 98	AK8	W	183	199	Right-handed alpha
Helix 99	AK9	W	207	218	Right-handed alpha
Helix 100	AL1	W	223	240	Right-handed alpha
Helix 101	AL2	W	240	245	Right-handed alpha
Helix 102	AL3	W	252	261	Right-handed alpha
Helix 103	AL4	W	289	298	Right-handed alpha
Helix 104	AL5	W	329	343	Right-handed alpha
Helix 105	AL6	W	383	402	Right-handed alpha
Helix 106	AL7	W	408	415	Right-handed alpha
Helix 107	AL8	W	418	439	Right-handed alpha
Helix 108	AL9	X	11	29	Right-handed alpha
Helix 109	AM1	X	73	79	Right-handed alpha
Helix 110	AM2	X	103	114	Right-handed alpha
Helix 111	AM3	X	114	129	Right-handed alpha
Helix 112	AM4	X	148	161	Right-handed alpha
Helix 113	AM5	X	183	199	Right-handed alpha
Helix 114	AM6	X	207	218	Right-handed alpha
Helix 115	AM7	X	223	240	Right-handed alpha
Helix 116	AM8	X	240	245	Right-handed alpha
Helix 117	AM9	X	252	261	Right-handed alpha
Helix 118	AN1	X	289	298	Right-handed alpha
Helix 119	AN2	X	329	343	Right-handed alpha
Helix 120	AN3	X	383	402	Right-handed alpha
Helix 121	AN4	X	408	415	Right-handed alpha
Helix 122	AN5	X	418	439	Right-handed alpha
Helix 123	AN6	Y	11	29	Right-handed alpha
Helix 124	AN7	Y	73	79	Right-handed alpha
Helix 125	AN8	Y	103	114	Right-handed alpha
Helix 126	AN9	Y	114	129	Right-handed alpha
Helix 127	AO1	Y	148	161	Right-handed alpha
Helix 128	AO2	Y	183	199	Right-handed alpha
Helix 129	AO3	Y	207	218	Right-handed alpha
Helix 130	AO4	Y	223	240	Right-handed alpha
Helix 131	AO5	Y	240	245	Right-handed alpha
Helix 132	AO6	Y	252	261	Right-handed alpha
Helix 133	AO7	Y	289	298	Right-handed alpha
Helix 134	AO8	Y	329	343	Right-handed alpha
Helix 135	AO9	Y	383	402	Right-handed alpha
Helix 136	AP1	Y	408	415	Right-handed alpha
Helix 137	AP2	Y	418	439	Right-handed alpha
Helix 138	AP3	Z	11	29	Right-handed alpha
Helix 139	AP4	Z	73	79	Right-handed alpha
Helix 140	AP5	Z	103	114	Right-handed alpha
Helix 141	AP6	Z	114	129	Right-handed alpha
Helix 142	AP7	Z	148	161	Right-handed alpha
Helix 143	AP8	Z	183	199	Right-handed alpha
Helix 144	AP9	Z	207	218	Right-handed alpha
Helix 145	AQ1	Z	223	240	Right-handed alpha
Helix 146	AQ2	Z	240	245	Right-handed alpha
Helix 147	AQ3	Z	252	261	Right-handed alpha
Helix 148	AQ4	Z	289	298	Right-handed alpha
Helix 149	AQ5	Z	329	343	Right-handed alpha
Helix 150	AQ6	Z	383	402	Right-handed alpha
Helix 151	AQ7	Z	408	415	Right-handed alpha
Helix 152	AQ8	Z	418	439	Right-handed alpha

There are 10 sheets in PDB entry 7QJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	288	289	first strand
Strand 2	J	294	295	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1572	1575	first strand
Strand 2	L	1595	1598	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	64	66	first strand
Strand 2	W	4	10	parallel
Strand 3	W	132	140	parallel
Strand 4	W	165	172	parallel
Strand 5	W	201	206	parallel
Strand 6	W	268	273	parallel
Strand 7	W	374	381	anti-parallel
Strand 8	W	317	325	anti-parallel
Strand 9	W	356	361	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	52	55	first strand
Strand 2	W	59	62	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	64	66	first strand
Strand 2	X	4	10	parallel
Strand 3	X	132	140	parallel
Strand 4	X	165	172	parallel
Strand 5	X	201	206	parallel
Strand 6	X	268	273	parallel
Strand 7	X	374	381	anti-parallel
Strand 8	X	317	325	anti-parallel
Strand 9	X	356	361	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	52	55	first strand
Strand 2	X	59	62	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	64	66	first strand
Strand 2	Y	4	10	parallel
Strand 3	Y	132	140	parallel
Strand 4	Y	165	172	parallel
Strand 5	Y	201	206	parallel
Strand 6	Y	268	273	parallel
Strand 7	Y	374	381	anti-parallel
Strand 8	Y	317	325	anti-parallel
Strand 9	Y	356	361	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	52	55	first strand
Strand 2	Y	59	62	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	64	66	first strand
Strand 2	Z	4	10	parallel
Strand 3	Z	132	140	parallel
Strand 4	Z	165	172	parallel
Strand 5	Z	201	206	parallel
Strand 6	Z	268	273	parallel
Strand 7	Z	374	381	anti-parallel
Strand 8	Z	317	325	anti-parallel
Strand 9	Z	356	361	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	52	55	first strand
Strand 2	Z	59	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJE