Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QJI entry

There are 6 chains in PDB entry 7QJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 41ILE 438
C
 GLN 1VAL 117
B
 GLN 3VAL 123
E
 ALA 41ILE 438
F
 GLN 1VAL 117
G
 GLN 3VAL 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 7QJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
70 74Right-handed 310
Helix 4
AA4
A
75 99Right-handed alpha
Helix 5
AA5
A
101 110Right-handed alpha
Helix 6
AA6
A
111 143Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
A
167 179Right-handed alpha
Helix 9
AA9
A
180 192Right-handed alpha
Helix 10
AB1
A
195 202Right-handed alpha
Helix 11
AB2
A
211 226Right-handed alpha
Helix 12
AB3
A
227 242Right-handed alpha
Helix 13
AB4
A
244 246Right-handed 310
Helix 14
AB5
A
247 277Right-handed alpha
Helix 15
AB6
A
286 292Right-handed alpha
Helix 16
AB7
A
294 299Right-handed alpha
Helix 17
AB8
A
301 333Right-handed alpha
Helix 18
AB9
A
346 365Right-handed alpha
Helix 19
AC1
A
370 398Right-handed alpha
Helix 20
AC2
A
409 437Right-handed alpha
Helix 21
AC3
B
28 32Right-handed 310
Helix 22
AC4
B
62 65Right-handed 310
Helix 23
AC5
B
108 112Right-handed 310
Helix 24
AC6
E
43 53Right-handed alpha
Helix 25
AC7
E
55 69Right-handed alpha
Helix 26
AC8
E
70 74Right-handed 310
Helix 27
AC9
E
75 99Right-handed alpha
Helix 28
AD1
E
101 110Right-handed alpha
Helix 29
AD2
E
111 143Right-handed alpha
Helix 30
AD3
E
151 165Right-handed alpha
Helix 31
AD4
E
167 179Right-handed alpha
Helix 32
AD5
E
180 192Right-handed alpha
Helix 33
AD6
E
195 202Right-handed alpha
Helix 34
AD7
E
211 226Right-handed alpha
Helix 35
AD8
E
227 242Right-handed alpha
Helix 36
AD9
E
244 246Right-handed 310
Helix 37
AE1
E
247 277Right-handed alpha
Helix 38
AE2
E
286 292Right-handed alpha
Helix 39
AE3
E
294 299Right-handed alpha
Helix 40
AE4
E
301 333Right-handed alpha
Helix 41
AE5
E
346 365Right-handed alpha
Helix 42
AE6
E
370 398Right-handed alpha
Helix 43
AE7
E
409 437Right-handed alpha
Helix 44
AE8
G
28 32Right-handed 310
Helix 45
AE9
G
62 65Right-handed 310
Helix 46
AF1
G
108 112Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7QJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
18 26anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 93first strand
Strand 2
C
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
35 38anti-parallel
Strand 4
B
92 96anti-parallel
Strand 5
B
119 121anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 8first strand
Strand 2
F
18 26anti-parallel
Strand 3
F
77 82anti-parallel
Strand 4
F
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 34first strand
Strand 2
F
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
91 93first strand
Strand 2
F
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
18 20first strand
Strand 2
G
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
58 60first strand
Strand 2
G
46 51anti-parallel
Strand 3
G
35 38anti-parallel
Strand 4
G
92 96anti-parallel
Strand 5
G
119 121anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il