Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QJM entry

There are 2 chains in PDB entry 7QJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 77SER 377
B
 SER 80VAL 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7QJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
126 137Right-handed alpha
Helix 2
AA2
A
160 177Right-handed alpha
Helix 3
AA3
A
192 205Right-handed alpha
Helix 4
AA4
A
219 227Right-handed alpha
Helix 5
AA5
A
229 251Right-handed alpha
Helix 6
AA6
A
257 261Right-handed 310
Helix 7
AA7
A
265 279Right-handed alpha
Helix 8
AA8
A
280 283Right-handed 310
Helix 9
AA9
A
288 296Right-handed alpha
Helix 10
AB1
A
299 304Right-handed alpha
Helix 11
AB2
A
305 307Right-handed 310
Helix 12
AB3
A
323 335Right-handed alpha
Helix 13
AB4
A
356 372Right-handed alpha
Helix 14
AB5
B
126 137Right-handed alpha
Helix 15
AB6
B
160 177Right-handed alpha
Helix 16
AB7
B
192 205Right-handed alpha
Helix 17
AB8
B
219 227Right-handed alpha
Helix 18
AB9
B
229 251Right-handed alpha
Helix 19
AC1
B
257 261Right-handed 310
Helix 20
AC2
B
265 279Right-handed alpha
Helix 21
AC3
B
280 283Right-handed 310
Helix 22
AC4
B
288 296Right-handed alpha
Helix 23
AC5
B
299 304Right-handed alpha
Helix 24
AC6
B
305 307Right-handed 310
Helix 25
AC7
B
323 334Right-handed alpha
Helix 26
AC8
B
356 372Right-handed alpha
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There are 4 sheets in PDB entry 7QJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 89first strand
Strand 2
A
92 99anti-parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
110 116parallel
Strand 5
A
181 191parallel
Strand 6
A
208 214parallel
Strand 7
A
311 315parallel
Strand 8
A
338 342parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
286 287anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 89first strand
Strand 2
B
92 99anti-parallel
Strand 3
B
140 144anti-parallel
Strand 4
B
110 116parallel
Strand 5
B
181 191parallel
Strand 6
B
208 214parallel
Strand 7
B
311 315parallel
Strand 8
B
338 342parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
286 287anti-parallel
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