Analysis of interatomic Contacts of Structural Units in PDB entry:
7QJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QJO entry

There are 2 chains in PDB entry 7QJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 1THR 262
A
 SER 1THR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7QJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
11 17Right-handed alpha
Helix 2
AA2
B
64 69Right-handed 310
Helix 3
AA3
B
70 77Right-handed alpha
Helix 4
AA4
B
93 111Right-handed alpha
Helix 5
AA5
B
114 116Right-handed 310
Helix 6
AA6
B
129 142Right-handed alpha
Helix 7
AA7
B
183 190Right-handed alpha
Helix 8
AA8
B
208 212Right-handed 310
Helix 9
AA9
B
214 230Right-handed alpha
Helix 10
AB1
B
232 234Right-handed 310
Helix 11
AB2
B
235 240Right-handed alpha
Helix 12
AB3
A
11 17Right-handed alpha
Helix 13
AB4
A
64 69Right-handed 310
Helix 14
AB5
A
70 77Right-handed alpha
Helix 15
AB6
A
93 111Right-handed alpha
Helix 16
AB7
A
114 116Right-handed 310
Helix 17
AB8
A
129 142Right-handed alpha
Helix 18
AB9
A
183 190Right-handed alpha
Helix 19
AC1
A
208 212Right-handed 310
Helix 20
AC2
A
214 230Right-handed alpha
Helix 21
AC3
A
232 234Right-handed 310
Helix 22
AC4
A
235 240Right-handed alpha
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There are 4 sheets in PDB entry 7QJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 29first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
81 85anti-parallel
Strand 4
B
52 58parallel
Strand 5
B
118 128parallel
Strand 6
B
147 151parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 172first strand
Strand 2
B
197 202parallel
Strand 3
B
251 255anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
52 58parallel
Strand 5
A
118 128parallel
Strand 6
A
147 151parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
197 202parallel
Strand 3
A
251 255anti-parallel
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