Analysis of interatomic Contacts of Structural Units in PDB entry:
7QKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QKR entry

There is 1 chain in PDB entry 7QKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 32ALA 1288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 7QKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 42Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
58 60Right-handed 310
Helix 4
AA4
A
61 80Right-handed alpha
Helix 5
AA5
A
82 101Right-handed alpha
Helix 6
AA6
A
104 158Right-handed alpha
Helix 7
AA7
A
160 167Right-handed alpha
Helix 8
AA8
A
170 178Right-handed alpha
Helix 9
AA9
A
179 187Right-handed alpha
Helix 10
AB1
A
188 212Right-handed alpha
Helix 11
AB2
A
212 229Right-handed alpha
Helix 12
AB3
A
230 261Right-handed alpha
Helix 13
AB4
A
261 269Right-handed alpha
Helix 14
AB5
A
270 326Right-handed alpha
Helix 15
AB6
A
328 372Right-handed alpha
Helix 16
AB7
A
433 442Right-handed alpha
Helix 17
AB8
A
460 462Right-handed 310
Helix 18
AB9
A
463 470Right-handed alpha
Helix 19
AC1
A
485 491Right-handed alpha
Helix 20
AC2
A
492 494Right-handed 310
Helix 21
AC3
A
502 517Right-handed alpha
Helix 22
AC4
A
519 526Right-handed alpha
Helix 23
AC5
A
542 557Right-handed alpha
Helix 24
AC6
A
572 588Right-handed alpha
Helix 25
AC7
A
621 629Right-handed alpha
Helix 26
AC8
A
630 646Right-handed alpha
Helix 27
AC9
A
699 706Right-handed alpha
Helix 28
AD1
A
707 712Right-handed 310
Helix 29
AD2
A
715 741Right-handed alpha
Helix 30
AD3
A
745 747Right-handed 310
Helix 31
AD4
A
748 801Right-handed alpha
Helix 32
AD5
A
804 810Right-handed alpha
Helix 33
AD6
A
814 829Right-handed alpha
Helix 34
AD7
A
830 832Right-handed 310
Helix 35
AD8
A
833 858Right-handed alpha
Helix 36
AD9
A
858 894Right-handed alpha
Helix 37
AE1
A
897 906Right-handed alpha
Helix 38
AE2
A
907 915Right-handed alpha
Helix 39
AE3
A
916 971Right-handed alpha
Helix 40
AE4
A
974 997Right-handed alpha
Helix 41
AE5
A
998 1018Right-handed alpha
Helix 42
AE6
A
1084 1091Right-handed alpha
Helix 43
AE7
A
1109 1111Right-handed 310
Helix 44
AE8
A
1112 1119Right-handed alpha
Helix 45
AE9
A
1133 1139Right-handed alpha
Helix 46
AF1
A
1140 1142Right-handed 310
Helix 47
AF2
A
1153 1162Right-handed alpha
Helix 48
AF3
A
1164 1170Right-handed alpha
Helix 49
AF4
A
1187 1202Right-handed alpha
Helix 50
AF5
A
1217 1233Right-handed alpha
Helix 51
AF6
A
1245 1250Right-handed 310
Helix 52
AF7
A
1266 1274Right-handed alpha
Helix 53
AF8
A
1275 1288Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7QKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 418first strand
Strand 2
A
393 400anti-parallel
Strand 3
A
449 454anti-parallel
Strand 4
A
457 458anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 474first strand
Strand 2
A
561 565parallel
Strand 3
A
591 595parallel
Strand 4
A
423 427parallel
Strand 5
A
607 612parallel
Strand 6
A
615 620anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1067first strand
Strand 2
A
1042 1050anti-parallel
Strand 3
A
1098 1103anti-parallel
Strand 4
A
1106 1107anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1123first strand
Strand 2
A
1206 1210parallel
Strand 3
A
1236 1240parallel
Strand 4
A
1072 1077parallel
Strand 5
A
1252 1257parallel
Strand 6
A
1260 1265anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il