Analysis of interatomic Contacts of Structural Units in PDB entry:
7QLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QLR entry

There are 3 chains in PDB entry 7QLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 14ILE 616
B
GLN 14ILE 616
C
GLY 15PHE 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are182 helices in PDB entry 7QLR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
32 40Right-handed 310
Helix 3
AA3
A
41 52Right-handed alpha
Helix 4
AA4
A
53 58Right-handed alpha
Helix 5
AA5
A
61 69Right-handed alpha
Helix 6
AA6
A
70 81Right-handed alpha
Helix 7
AA7
A
83 92Right-handed alpha
Helix 8
AA8
A
101 108Right-handed alpha
Helix 9
AA9
A
110 116Right-handed alpha
Helix 10
AB1
A
118 136Right-handed alpha
Helix 11
AB2
A
137 146Right-handed alpha
Helix 12
AB3
A
150 155Right-handed alpha
Helix 13
AB4
A
158 165Right-handed alpha
Helix 14
AB5
A
165 174Right-handed alpha
Helix 15
AB6
A
175 184Right-handed alpha
Helix 16
AB7
A
185 195Right-handed alpha
Helix 17
AB8
A
195 210Right-handed alpha
Helix 18
AB9
A
212 221Right-handed alpha
Helix 19
AC1
A
222 231Right-handed alpha
Helix 20
AC2
A
232 242Right-handed alpha
Helix 21
AC3
A
242 251Right-handed alpha
Helix 22
AC4
A
252 260Right-handed alpha
Helix 23
AC5
A
262 271Right-handed alpha
Helix 24
AC6
A
272 278Right-handed alpha
Helix 25
AC7
A
278 313Right-handed alpha
Helix 26
AC8
A
324 357Right-handed alpha
Helix 27
AC9
A
358 367Right-handed alpha
Helix 28
AD1
A
368 378Right-handed alpha
Helix 29
AD2
A
380 387Right-handed alpha
Helix 30
AD3
A
388 397Right-handed alpha
Helix 31
AD4
A
398 406Right-handed alpha
Helix 32
AD5
A
408 418Right-handed alpha
Helix 33
AD6
A
418 427Right-handed alpha
Helix 34
AD7
A
428 437Right-handed alpha
Helix 35
AD8
A
438 447Right-handed alpha
Helix 36
AD9
A
448 457Right-handed alpha
Helix 37
AE1
A
458 467Right-handed alpha
Helix 38
AE2
A
468 476Right-handed alpha
Helix 39
AE3
A
478 487Right-handed alpha
Helix 40
AE4
A
488 498Right-handed alpha
Helix 41
AE5
A
498 508Right-handed alpha
Helix 42
AE6
A
508 515Right-handed alpha
Helix 43
AE7
A
515 526Right-handed alpha
Helix 44
AE8
A
561 563Right-handed 310
Helix 45
AE9
A
587 589Right-handed 310
Helix 46
AF1
B
17 31Right-handed alpha
Helix 47
AF2
B
32 40Right-handed 310
Helix 48
AF3
B
41 52Right-handed alpha
Helix 49
AF4
B
53 58Right-handed alpha
Helix 50
AF5
B
61 69Right-handed alpha
Helix 51
AF6
B
70 81Right-handed alpha
Helix 52
AF7
B
83 92Right-handed alpha
Helix 53
AF8
B
101 108Right-handed alpha
Helix 54
AF9
B
110 116Right-handed alpha
Helix 55
AG1
B
118 136Right-handed alpha
Helix 56
AG2
B
137 146Right-handed alpha
Helix 57
AG3
B
150 155Right-handed alpha
Helix 58
AG4
B
158 165Right-handed alpha
Helix 59
AG5
B
165 174Right-handed alpha
Helix 60
AG6
B
175 184Right-handed alpha
Helix 61
AG7
B
185 195Right-handed alpha
Helix 62
AG8
B
195 210Right-handed alpha
Helix 63
AG9
B
212 221Right-handed alpha
Helix 64
AH1
B
222 231Right-handed alpha
Helix 65
AH2
B
232 242Right-handed alpha
Helix 66
AH3
B
242 251Right-handed alpha
Helix 67
AH4
B
252 260Right-handed alpha
Helix 68
AH5
B
262 271Right-handed alpha
Helix 69
AH6
B
272 278Right-handed alpha
Helix 70
AH7
B
278 313Right-handed alpha
Helix 71
AH8
B
324 357Right-handed alpha
Helix 72
AH9
B
358 367Right-handed alpha
Helix 73
AI1
B
368 378Right-handed alpha
Helix 74
AI2
B
380 387Right-handed alpha
Helix 75
AI3
B
388 397Right-handed alpha
Helix 76
AI4
B
398 406Right-handed alpha
Helix 77
AI5
B
408 418Right-handed alpha
Helix 78
AI6
B
418 427Right-handed alpha
Helix 79
AI7
B
428 437Right-handed alpha
Helix 80
AI8
B
438 447Right-handed alpha
Helix 81
AI9
B
448 457Right-handed alpha
Helix 82
AJ1
B
458 467Right-handed alpha
Helix 83
AJ2
B
468 476Right-handed alpha
Helix 84
AJ3
B
478 487Right-handed alpha
Helix 85
AJ4
B
488 498Right-handed alpha
Helix 86
AJ5
B
498 508Right-handed alpha
Helix 87
AJ6
B
508 515Right-handed alpha
Helix 88
AJ7
B
515 526Right-handed alpha
Helix 89
AJ8
B
561 563Right-handed 310
Helix 90
AJ9
B
587 589Right-handed 310
Helix 91
AK1
C
17 31Right-handed alpha
Helix 92
AK2
C
32 40Right-handed 310
Helix 93
AK3
C
41 52Right-handed alpha
Helix 94
AK4
C
53 58Right-handed alpha
Helix 95
AK5
C
61 69Right-handed alpha
Helix 96
AK6
C
70 81Right-handed alpha
Helix 97
AK7
C
83 92Right-handed alpha
Helix 98
AK8
C
101 108Right-handed alpha
Helix 99
AK9
C
110 116Right-handed alpha
Helix 100
AL1
C
118 135Right-handed alpha
Helix 101
AL2
C
137 146Right-handed alpha
Helix 102
AL3
C
150 155Right-handed alpha
Helix 103
AL4
C
158 165Right-handed alpha
Helix 104
AL5
C
165 174Right-handed alpha
Helix 105
AL6
C
175 184Right-handed alpha
Helix 106
AL7
C
185 195Right-handed alpha
Helix 107
AL8
C
197 205Right-handed alpha
Helix 108
AL9
C
205 210Right-handed alpha
Helix 109
AM1
C
212 221Right-handed alpha
Helix 110
AM2
C
222 231Right-handed alpha
Helix 111
AM3
C
232 242Right-handed alpha
Helix 112
AM4
C
242 251Right-handed alpha
Helix 113
AM5
C
252 260Right-handed alpha
Helix 114
AM6
C
262 271Right-handed alpha
Helix 115
AM7
C
272 278Right-handed alpha
Helix 116
AM8
C
278 313Right-handed alpha
Helix 117
AM9
C
324 357Right-handed alpha
Helix 118
AN1
C
358 367Right-handed alpha
Helix 119
AN2
C
368 378Right-handed alpha
Helix 120
AN3
C
380 387Right-handed alpha
Helix 121
AN4
C
388 397Right-handed alpha
Helix 122
AN5
C
398 406Right-handed alpha
Helix 123
AN6
C
408 418Right-handed alpha
Helix 124
AN7
C
418 426Right-handed alpha
Helix 125
AN8
C
428 437Right-handed alpha
Helix 126
AN9
C
438 447Right-handed alpha
Helix 127
AO1
C
448 457Right-handed alpha
Helix 128
AO2
C
458 467Right-handed alpha
Helix 129
AO3
C
468 476Right-handed alpha
Helix 130
AO4
C
478 487Right-handed alpha
Helix 131
AO5
C
488 498Right-handed alpha
Helix 132
AO6
C
498 508Right-handed alpha
Helix 133
AO7
C
508 515Right-handed alpha
Helix 134
AO8
C
515 526Right-handed alpha
Helix 135
AO9
C
561 563Right-handed 310
Helix 136
AP1
C
587 589Right-handed 310
Helix 137
AP2
D
17 31Right-handed alpha
Helix 138
AP3
D
32 40Right-handed 310
Helix 139
AP4
D
41 52Right-handed alpha
Helix 140
AP5
D
53 58Right-handed alpha
Helix 141
AP6
D
61 69Right-handed alpha
Helix 142
AP7
D
70 81Right-handed alpha
Helix 143
AP8
D
83 92Right-handed alpha
Helix 144
AP9
D
101 108Right-handed alpha
Helix 145
AQ1
D
110 116Right-handed alpha
Helix 146
AQ2
D
118 135Right-handed alpha
Helix 147
AQ3
D
137 146Right-handed alpha
Helix 148
AQ4
D
150 155Right-handed alpha
Helix 149
AQ5
D
158 165Right-handed alpha
Helix 150
AQ6
D
165 174Right-handed alpha
Helix 151
AQ7
D
175 184Right-handed alpha
Helix 152
AQ8
D
185 195Right-handed alpha
Helix 153
AQ9
D
197 205Right-handed alpha
Helix 154
AR1
D
205 210Right-handed alpha
Helix 155
AR2
D
212 221Right-handed alpha
Helix 156
AR3
D
222 231Right-handed alpha
Helix 157
AR4
D
232 241Right-handed alpha
Helix 158
AR5
D
242 251Right-handed alpha
Helix 159
AR6
D
252 260Right-handed alpha
Helix 160
AR7
D
262 271Right-handed alpha
Helix 161
AR8
D
272 278Right-handed alpha
Helix 162
AR9
D
278 313Right-handed alpha
Helix 163
AS1
D
324 357Right-handed alpha
Helix 164
AS2
D
358 367Right-handed alpha
Helix 165
AS3
D
368 378Right-handed alpha
Helix 166
AS4
D
380 387Right-handed alpha
Helix 167
AS5
D
388 397Right-handed alpha
Helix 168
AS6
D
398 406Right-handed alpha
Helix 169
AS7
D
408 418Right-handed alpha
Helix 170
AS8
D
418 427Right-handed alpha
Helix 171
AS9
D
428 437Right-handed alpha
Helix 172
AT1
D
438 447Right-handed alpha
Helix 173
AT2
D
448 457Right-handed alpha
Helix 174
AT3
D
458 467Right-handed alpha
Helix 175
AT4
D
468 476Right-handed alpha
Helix 176
AT5
D
478 488Right-handed alpha
Helix 177
AT6
D
488 498Right-handed alpha
Helix 178
AT7
D
498 508Right-handed alpha
Helix 179
AT8
D
508 515Right-handed alpha
Helix 180
AT9
D
515 526Right-handed alpha
Helix 181
AU1
D
561 563Right-handed 310
Helix 182
AU2
D
587 589Right-handed 310
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There are 8 sheets in PDB entry 7QLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
315 316first strand
Strand 2
A
319 320anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
530 539first strand
Strand 2
A
606 615anti-parallel
Strand 3
A
546 559anti-parallel
Strand 4
A
591 603anti-parallel
Strand 5
A
566 571anti-parallel
Strand 6
A
578 582anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
315 316first strand
Strand 2
B
319 320anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
530 539first strand
Strand 2
B
606 615anti-parallel
Strand 3
B
546 559anti-parallel
Strand 4
B
591 603anti-parallel
Strand 5
B
566 571anti-parallel
Strand 6
B
578 582anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
315 316first strand
Strand 2
C
319 320anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
530 539first strand
Strand 2
C
606 615anti-parallel
Strand 3
C
546 559anti-parallel
Strand 4
C
591 603anti-parallel
Strand 5
C
566 571anti-parallel
Strand 6
C
578 582anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
315 316first strand
Strand 2
D
319 320anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
530 539first strand
Strand 2
D
606 615anti-parallel
Strand 3
D
546 559anti-parallel
Strand 4
D
591 603anti-parallel
Strand 5
D
566 571anti-parallel
Strand 6
D
578 582anti-parallel
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