Analysis of interatomic Contacts of Structural Units in PDB entry:
7QNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QNN entry

There is 1 chain in PDB entry 7QNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19GLY 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7QNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 37Right-handed alpha
Helix 2
AA2
A
39 50Right-handed alpha
Helix 3
AA3
A
75 85Right-handed alpha
Helix 4
AA4
A
105 111Right-handed alpha
Helix 5
AA5
A
112 119Right-handed 310
Helix 6
AA6
A
122 132Right-handed alpha
Helix 7
AA7
A
133 135Right-handed 310
Helix 8
AA8
A
136 142Right-handed alpha
Helix 9
AA9
A
143 161Right-handed alpha
Helix 10
AB1
A
166 170Right-handed alpha
Helix 11
AB2
A
172 184Right-handed alpha
Helix 12
AB3
A
186 188Right-handed 310
Helix 13
AB4
A
189 198Right-handed alpha
Helix 14
AB5
A
205 209Right-handed 310
Helix 15
AB6
A
212 234Right-handed alpha
Helix 16
AB7
A
238 245Right-handed alpha
Helix 17
AB8
A
254 269Right-handed alpha
Helix 18
AB9
A
270 287Right-handed alpha
Helix 19
AC1
A
287 298Right-handed alpha
Helix 20
AC2
A
300 311Right-handed alpha
Helix 21
AC3
A
341 345Right-handed alpha
Helix 22
AC4
A
379 398Right-handed alpha
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There are 4 sheets in PDB entry 7QNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
336 340parallel
Strand 4
A
315 320anti-parallel
Strand 5
A
89 90anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
422 424anti-parallel
Strand 3
A
402 403anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
329 331anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
418 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il