Analysis of interatomic Contacts of Structural Units in PDB entry:
7QO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QO1 entry

There are 8 chains in PDB entry 7QO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 262	SER 901
B	MET 1	ILE 255
F	MET 1	ILE 255
G	MET 1	ILE 255
H	G 1	T 18
I	G 20	C 31
J	G 1	C 31
Y	GLY 2	ALA 353

There are 59 helices in PDB entry 7QO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	262	266	Right-handed 310
Helix 2	AA2	A	288	301	Right-handed alpha
Helix 3	AA3	A	304	323	Right-handed alpha
Helix 4	AA4	A	326	336	Right-handed alpha
Helix 5	AA5	A	340	344	Right-handed 310
Helix 6	AA6	A	350	363	Right-handed alpha
Helix 7	AA7	A	365	377	Right-handed alpha
Helix 8	AA8	A	378	383	Right-handed alpha
Helix 9	AA9	A	400	414	Right-handed alpha
Helix 10	AB1	A	418	433	Right-handed alpha
Helix 11	AB2	A	437	447	Right-handed alpha
Helix 12	AB3	A	455	470	Right-handed alpha
Helix 13	AB4	A	488	510	Right-handed alpha
Helix 14	AB5	A	512	524	Right-handed alpha
Helix 15	AB6	A	527	531	Right-handed 310
Helix 16	AB7	A	550	558	Right-handed alpha
Helix 17	AB8	A	598	609	Right-handed alpha
Helix 18	AB9	A	634	640	Right-handed alpha
Helix 19	AC1	A	674	685	Right-handed alpha
Helix 20	AC2	A	703	717	Right-handed alpha
Helix 21	AC3	A	747	751	Right-handed alpha
Helix 22	AC4	A	768	772	Right-handed 310
Helix 23	AC5	A	801	813	Right-handed alpha
Helix 24	AC6	A	883	887	Right-handed 310
Helix 25	AC7	A	889	900	Right-handed alpha
Helix 26	AC8	B	8	21	Right-handed alpha
Helix 27	AC9	B	55	57	Right-handed 310
Helix 28	AD1	B	72	81	Right-handed alpha
Helix 29	AD2	B	141	152	Right-handed alpha
Helix 30	AD3	B	209	216	Right-handed alpha
Helix 31	AD4	B	217	222	Right-handed 310
Helix 32	AD5	F	8	20	Right-handed alpha
Helix 33	AD6	F	55	57	Right-handed 310
Helix 34	AD7	F	72	80	Right-handed alpha
Helix 35	AD8	F	141	155	Right-handed alpha
Helix 36	AD9	F	209	216	Right-handed alpha
Helix 37	AE1	F	217	222	Right-handed 310
Helix 38	AE2	G	9	23	Right-handed alpha
Helix 39	AE3	G	55	57	Right-handed 310
Helix 40	AE4	G	72	80	Right-handed alpha
Helix 41	AE5	G	141	153	Right-handed alpha
Helix 42	AE6	G	209	216	Right-handed alpha
Helix 43	AE7	G	217	222	Right-handed 310
Helix 44	AE8	Y	5	14	Right-handed alpha
Helix 45	AE9	Y	22	27	Right-handed 310
Helix 46	AF1	Y	35	44	Right-handed alpha
Helix 47	AF2	Y	61	77	Right-handed alpha
Helix 48	AF3	Y	135	148	Right-handed alpha
Helix 49	AF4	Y	158	169	Right-handed alpha
Helix 50	AF5	Y	180	185	Right-handed alpha
Helix 51	AF6	Y	209	217	Right-handed alpha
Helix 52	AF7	Y	220	232	Right-handed alpha
Helix 53	AF8	Y	244	253	Right-handed alpha
Helix 54	AF9	Y	255	263	Right-handed alpha
Helix 55	AG1	Y	277	285	Right-handed alpha
Helix 56	AG2	Y	290	294	Right-handed 310
Helix 57	AG3	Y	304	314	Right-handed alpha
Helix 58	AG4	Y	317	332	Right-handed alpha
Helix 59	AG5	Y	339	343	Right-handed 310

There are 16 sheets in PDB entry 7QO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	548	first strand
Strand 2	A	742	746	parallel
Strand 3	A	721	726	anti-parallel
Strand 4	A	563	568	anti-parallel
Strand 5	A	698	699	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	587	first strand
Strand 2	A	572	578	anti-parallel
Strand 3	A	616	624	anti-parallel
Strand 4	A	655	665	anti-parallel
Strand 5	A	668	669	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	587	first strand
Strand 2	A	572	578	anti-parallel
Strand 3	A	616	624	anti-parallel
Strand 4	A	655	665	anti-parallel
Strand 5	A	693	695	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	817	first strand
Strand 2	A	834	836	anti-parallel
Strand 3	A	756	766	anti-parallel
Strand 4	A	775	784	anti-parallel
Strand 5	A	789	796	anti-parallel
Strand 6	A	824	825	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	817	first strand
Strand 2	A	834	836	anti-parallel
Strand 3	A	756	766	anti-parallel
Strand 4	A	841	845	anti-parallel
Strand 5	A	874	879	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	848	850	first strand
Strand 2	A	869	871	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	111	117	anti-parallel
Strand 6	F	176	183	anti-parallel
Strand 7	F	166	173	anti-parallel
Strand 8	F	157	163	anti-parallel
Strand 9	F	203	208	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	25	31	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	46	53	anti-parallel
Strand 5	B	245	251	anti-parallel
Strand 6	B	235	241	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	196	199	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	203	208	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	173	first strand
Strand 2	B	176	183	anti-parallel
Strand 3	G	110	117	anti-parallel
Strand 4	G	98	104	anti-parallel
Strand 5	G	87	92	anti-parallel
Strand 6	G	2	6	anti-parallel
Strand 7	G	59	62	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	111	117	anti-parallel
Strand 6	G	176	182	anti-parallel
Strand 7	G	166	173	anti-parallel
Strand 8	G	157	163	anti-parallel
Strand 9	G	203	208	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	235	241	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	235	241	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	126	first strand
Strand 2	Y	346	350	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	18	21	first strand
Strand 2	Y	204	208	anti-parallel
Strand 3	Y	189	192	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	152	154	first strand
Strand 2	Y	80	85	parallel
Strand 3	Y	30	34	parallel
Strand 4	Y	174	176	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QO1