Analysis of interatomic Contacts of Structural Units in PDB entry:
7QO8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QO8 entry

There are 6 chains in PDB entry 7QO8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 166
B	MET 1	LYS 166
C	MET 1	LYS 166
D	MET 1	LYS 166
E	MET 1	LYS 166
F	MET 1	LYS 166

There are 60 helices in PDB entry 7QO8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	55	57	Right-handed 310
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	71	77	Right-handed alpha
Helix 5	AA5	A	79	92	Right-handed alpha
Helix 6	AA6	A	103	110	Right-handed alpha
Helix 7	AA7	A	120	122	Right-handed 310
Helix 8	AA8	A	123	130	Right-handed alpha
Helix 9	AA9	A	150	152	Right-handed 310
Helix 10	AB1	A	153	165	Right-handed alpha
Helix 11	AB2	B	12	26	Right-handed alpha
Helix 12	AB3	B	55	57	Right-handed 310
Helix 13	AB4	B	58	62	Right-handed 310
Helix 14	AB5	B	71	77	Right-handed alpha
Helix 15	AB6	B	79	92	Right-handed alpha
Helix 16	AB7	B	102	110	Right-handed alpha
Helix 17	AB8	B	120	122	Right-handed 310
Helix 18	AB9	B	123	130	Right-handed alpha
Helix 19	AC1	B	150	152	Right-handed 310
Helix 20	AC2	B	153	165	Right-handed alpha
Helix 21	AC3	C	12	26	Right-handed alpha
Helix 22	AC4	C	55	57	Right-handed 310
Helix 23	AC5	C	58	62	Right-handed 310
Helix 24	AC6	C	71	77	Right-handed alpha
Helix 25	AC7	C	79	92	Right-handed alpha
Helix 26	AC8	C	103	110	Right-handed alpha
Helix 27	AC9	C	120	122	Right-handed 310
Helix 28	AD1	C	123	130	Right-handed alpha
Helix 29	AD2	C	150	152	Right-handed 310
Helix 30	AD3	C	153	165	Right-handed alpha
Helix 31	AD4	D	12	26	Right-handed alpha
Helix 32	AD5	D	55	57	Right-handed 310
Helix 33	AD6	D	58	62	Right-handed 310
Helix 34	AD7	D	71	77	Right-handed alpha
Helix 35	AD8	D	79	92	Right-handed alpha
Helix 36	AD9	D	102	110	Right-handed alpha
Helix 37	AE1	D	120	122	Right-handed 310
Helix 38	AE2	D	123	130	Right-handed alpha
Helix 39	AE3	D	150	152	Right-handed 310
Helix 40	AE4	D	153	165	Right-handed alpha
Helix 41	AE5	E	12	26	Right-handed alpha
Helix 42	AE6	E	55	57	Right-handed 310
Helix 43	AE7	E	58	62	Right-handed 310
Helix 44	AE8	E	71	77	Right-handed alpha
Helix 45	AE9	E	79	92	Right-handed alpha
Helix 46	AF1	E	103	110	Right-handed alpha
Helix 47	AF2	E	120	122	Right-handed 310
Helix 48	AF3	E	123	130	Right-handed alpha
Helix 49	AF4	E	150	152	Right-handed 310
Helix 50	AF5	E	153	166	Right-handed alpha
Helix 51	AF6	F	12	26	Right-handed alpha
Helix 52	AF7	F	55	57	Right-handed 310
Helix 53	AF8	F	58	62	Right-handed 310
Helix 54	AF9	F	71	77	Right-handed alpha
Helix 55	AG1	F	79	92	Right-handed alpha
Helix 56	AG2	F	103	110	Right-handed alpha
Helix 57	AG3	F	120	122	Right-handed 310
Helix 58	AG4	F	123	130	Right-handed alpha
Helix 59	AG5	F	150	152	Right-handed 310
Helix 60	AG6	F	153	165	Right-handed alpha

There are 18 sheets in PDB entry 7QO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	29	34	parallel
Strand 3	A	2	6	parallel
Strand 4	A	64	67	parallel
Strand 5	A	96	99	parallel
Strand 6	A	145	148	parallel
Strand 7	A	139	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	47	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	133	134	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	29	34	parallel
Strand 3	B	2	6	parallel
Strand 4	B	64	67	parallel
Strand 5	B	96	99	parallel
Strand 6	B	145	148	parallel
Strand 7	B	140	142	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	47	50	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	133	134	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	29	34	parallel
Strand 3	C	2	6	parallel
Strand 4	C	64	67	parallel
Strand 5	C	96	99	parallel
Strand 6	C	145	148	parallel
Strand 7	C	140	142	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	47	50	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	133	134	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	29	34	parallel
Strand 3	D	2	6	parallel
Strand 4	D	64	67	parallel
Strand 5	D	96	99	parallel
Strand 6	D	145	148	parallel
Strand 7	D	140	142	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	47	50	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	133	134	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	29	34	parallel
Strand 3	E	2	6	parallel
Strand 4	E	64	67	parallel
Strand 5	E	96	99	parallel
Strand 6	E	145	148	parallel
Strand 7	E	140	142	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	41	first strand
Strand 2	E	47	50	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	133	134	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	29	34	parallel
Strand 3	F	2	6	parallel
Strand 4	F	64	67	parallel
Strand 5	F	96	99	parallel
Strand 6	F	145	148	parallel
Strand 7	F	139	142	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	41	first strand
Strand 2	F	47	50	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	117	first strand
Strand 2	F	133	134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QO8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QO8