Analysis of interatomic Contacts of Structural Units in PDB entry:
7QOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QOJ entry

There are 14 chains in PDB entry 7QOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	GLU 739
B	MET 1	HIS 236
C	MET 1	ARG 225
D	MET 1	THR 226
E	MET 1	GLU 238
F	MET 1	GLU 238
G	MET 1	CYS 204
H	MET 1	GLY 215
I	MET 1	ASP 107
J	MET 1	SER 19
K	MET 1	SER 19
L	MET 1	PHE 25
M	ALA 425	GLY 552
N	PHE 214	PRO 245

There are 93 helices in PDB entry 7QOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	18	32	Right-handed alpha
Helix 3	AA3	A	43	55	Right-handed alpha
Helix 4	AA4	A	59	63	Right-handed 310
Helix 5	AA5	A	87	101	Right-handed alpha
Helix 6	AA6	A	116	138	Right-handed alpha
Helix 7	AA7	A	143	153	Right-handed alpha
Helix 8	AA8	A	158	179	Right-handed alpha
Helix 9	AA9	A	179	195	Right-handed alpha
Helix 10	AB1	A	214	216	Right-handed 310
Helix 11	AB2	A	242	250	Right-handed alpha
Helix 12	AB3	A	255	265	Right-handed alpha
Helix 13	AB4	A	429	455	Right-handed alpha
Helix 14	AB5	A	472	484	Right-handed alpha
Helix 15	AB6	A	492	494	Right-handed 310
Helix 16	AB7	A	495	500	Right-handed alpha
Helix 17	AB8	A	504	509	Right-handed 310
Helix 18	AB9	A	518	541	Right-handed alpha
Helix 19	AC1	A	565	598	Right-handed alpha
Helix 20	AC2	A	599	600	Right-handed 310
Helix 21	AC3	A	601	602	Right-handed 310
Helix 22	AC4	A	603	608	Right-handed alpha
Helix 23	AC5	A	609	615	Right-handed alpha
Helix 24	AC6	A	616	618	Right-handed 310
Helix 25	AC7	A	624	628	Right-handed 310
Helix 26	AC8	A	635	654	Right-handed alpha
Helix 27	AC9	A	659	668	Right-handed alpha
Helix 28	AD1	A	671	739	Right-handed alpha
Helix 29	AD2	B	10	18	Right-handed alpha
Helix 30	AD3	B	19	24	Right-handed 310
Helix 31	AD4	B	27	43	Right-handed alpha
Helix 32	AD5	B	44	48	Right-handed 310
Helix 33	AD6	B	147	170	Right-handed alpha
Helix 34	AD7	B	173	197	Right-handed alpha
Helix 35	AD8	B	199	211	Right-handed alpha
Helix 36	AD9	C	2	15	Right-handed alpha
Helix 37	AE1	C	24	45	Right-handed alpha
Helix 38	AE2	C	52	56	Right-handed 310
Helix 39	AE3	C	111	116	Right-handed alpha
Helix 40	AE4	C	121	125	Right-handed 310
Helix 41	AE5	C	144	150	Right-handed 310
Helix 42	AE6	C	161	168	Right-handed alpha
Helix 43	AE7	C	179	183	Right-handed 310
Helix 44	AE8	C	188	190	Right-handed 310
Helix 45	AE9	C	191	208	Right-handed alpha
Helix 46	AF1	D	2	15	Right-handed alpha
Helix 47	AF2	D	26	47	Right-handed alpha
Helix 48	AF3	D	60	68	Right-handed alpha
Helix 49	AF4	D	132	137	Right-handed alpha
Helix 50	AF5	D	203	223	Right-handed alpha
Helix 51	AF6	E	2	15	Right-handed alpha
Helix 52	AF7	E	26	47	Right-handed alpha
Helix 53	AF8	E	48	51	Right-handed 310
Helix 54	AF9	E	60	68	Right-handed alpha
Helix 55	AG1	E	121	130	Right-handed alpha
Helix 56	AG2	E	204	206	Right-handed 310
Helix 57	AG3	E	207	225	Right-handed alpha
Helix 58	AG4	E	226	234	Right-handed alpha
Helix 59	AG5	F	2	15	Right-handed alpha
Helix 60	AG6	F	26	47	Right-handed alpha
Helix 61	AG7	F	48	51	Right-handed 310
Helix 62	AG8	F	60	67	Right-handed alpha
Helix 63	AG9	F	121	129	Right-handed alpha
Helix 64	AH1	F	204	206	Right-handed 310
Helix 65	AH2	F	207	225	Right-handed alpha
Helix 66	AH3	F	226	234	Right-handed alpha
Helix 67	AH4	F	235	238	Right-handed 310
Helix 68	AH5	G	58	62	Right-handed alpha
Helix 69	AH6	G	91	94	Right-handed 310
Helix 70	AH7	G	104	107	Right-handed 310
Helix 71	AH8	G	145	161	Right-handed alpha
Helix 72	AH9	G	166	185	Right-handed alpha
Helix 73	AI1	G	187	199	Right-handed alpha
Helix 74	AI2	H	41	43	Right-handed 310
Helix 75	AI3	H	92	95	Right-handed alpha
Helix 76	AI4	H	103	107	Right-handed alpha
Helix 77	AI5	H	144	157	Right-handed alpha
Helix 78	AI6	H	158	160	Right-handed 310
Helix 79	AI7	H	166	185	Right-handed alpha
Helix 80	AI8	H	187	199	Right-handed alpha
Helix 81	AI9	I	2	22	Right-handed alpha
Helix 82	AJ1	I	26	44	Right-handed alpha
Helix 83	AJ2	I	47	51	Right-handed 310
Helix 84	AJ3	I	52	64	Right-handed alpha
Helix 85	AJ4	J	4	17	Right-handed alpha
Helix 86	AJ5	K	4	18	Right-handed alpha
Helix 87	AJ6	L	4	17	Right-handed alpha
Helix 88	AJ7	L	21	25	Right-handed 310
Helix 89	AJ8	M	490	496	Right-handed alpha
Helix 90	AJ9	M	503	512	Right-handed alpha
Helix 91	AK1	M	512	517	Right-handed alpha
Helix 92	AK2	M	521	552	Right-handed alpha
Helix 93	AK3	N	217	238	Right-handed alpha

There are 18 sheets in PDB entry 7QOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	630	633	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	212	first strand
Strand 2	A	196	204	anti-parallel
Strand 3	A	415	419	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	234	241	anti-parallel
Strand 3	A	328	347	anti-parallel
Strand 4	A	354	360	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	234	241	anti-parallel
Strand 3	A	328	347	anti-parallel
Strand 4	A	375	387	anti-parallel
Strand 5	A	391	397	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	461	first strand
Strand 2	A	513	515	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	144	145	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	56	first strand
Strand 2	B	126	133	anti-parallel
Strand 3	B	70	76	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	117	120	anti-parallel
Strand 3	B	110	113	anti-parallel
Strand 4	B	84	85	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	66	first strand
Strand 2	C	79	82	anti-parallel
Strand 3	C	138	141	anti-parallel
Strand 4	C	128	132	anti-parallel
Strand 5	C	107	109	parallel
Strand 6	C	96	98	anti-parallel
Strand 7	C	152	157	anti-parallel
Strand 8	C	57	66	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	76	first strand
Strand 2	D	166	175	anti-parallel
Strand 3	D	99	109	anti-parallel
Strand 4	D	121	126	anti-parallel
Strand 5	D	147	153	parallel
Strand 6	D	157	161	anti-parallel
Strand 7	D	90	94	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	75	first strand
Strand 2	E	164	173	anti-parallel
Strand 3	E	100	110	anti-parallel
Strand 4	E	113	119	anti-parallel
Strand 5	E	140	145	parallel
Strand 6	E	153	157	anti-parallel
Strand 7	E	92	95	anti-parallel
Strand 8	E	77	78	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	75	first strand
Strand 2	F	164	173	anti-parallel
Strand 3	F	100	110	anti-parallel
Strand 4	F	114	119	anti-parallel
Strand 5	F	140	145	parallel
Strand 6	F	153	157	anti-parallel
Strand 7	F	91	95	anti-parallel
Strand 8	F	77	78	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	8	first strand
Strand 2	G	14	20	anti-parallel
Strand 3	G	96	102	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	57	first strand
Strand 2	G	34	38	anti-parallel
Strand 3	G	115	120	anti-parallel
Strand 4	G	137	142	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	8	first strand
Strand 2	H	14	20	anti-parallel
Strand 3	H	96	102	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	57	first strand
Strand 2	H	31	39	anti-parallel
Strand 3	H	115	122	anti-parallel
Strand 4	H	137	142	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	429	430	first strand
Strand 2	M	437	438	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	442	443	first strand
Strand 2	M	476	478	anti-parallel
Strand 3	M	481	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QOJ