Analysis of interatomic Contacts of Structural Units in PDB entry:
7QOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QOO entry

There are 15 chains in PDB entry 7QOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PHE 303	ASP 306
H	ASP 38	MET 247
I	ASP 59	SER 738
K	VAL 17	GLN 269
L	LEU 27	GLU 344
M	MET 1	SER 176
N	MET 1	LYS 339
O	GLN 91	ARG 289
P	LEU 56	ASN 288
U	ASP 233	GLY 418
Q	LEU 60	SER 268
R	PHE 86	GLN 149
T	ASP 454	GLN 561
W	ALA 17	GLY 88
X	UNK 1	UNK 15

There are120 helices in PDB entry 7QOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	39	66	Right-handed alpha
Helix 2	AA2	H	74	118	Right-handed alpha
Helix 3	AA3	H	122	189	Right-handed alpha
Helix 4	AA4	H	194	224	Right-handed alpha
Helix 5	AA5	H	230	240	Right-handed alpha
Helix 6	AA6	I	60	74	Right-handed alpha
Helix 7	AA7	I	86	100	Right-handed alpha
Helix 8	AA8	I	105	117	Right-handed alpha
Helix 9	AA9	I	122	132	Right-handed alpha
Helix 10	AB1	I	141	152	Right-handed alpha
Helix 11	AB2	I	157	171	Right-handed alpha
Helix 12	AB3	I	181	183	Right-handed 310
Helix 13	AB4	I	184	190	Right-handed alpha
Helix 14	AB5	I	197	207	Right-handed alpha
Helix 15	AB6	I	215	230	Right-handed alpha
Helix 16	AB7	I	232	246	Right-handed alpha
Helix 17	AB8	I	247	250	Right-handed 310
Helix 18	AB9	I	267	274	Right-handed alpha
Helix 19	AC1	I	340	344	Right-handed 310
Helix 20	AC2	I	347	353	Right-handed alpha
Helix 21	AC3	I	372	377	Right-handed alpha
Helix 22	AC4	I	382	399	Right-handed alpha
Helix 23	AC5	I	407	429	Right-handed alpha
Helix 24	AC6	I	432	443	Right-handed alpha
Helix 25	AC7	I	451	456	Right-handed alpha
Helix 26	AC8	I	466	474	Right-handed alpha
Helix 27	AC9	I	474	483	Right-handed alpha
Helix 28	AD1	I	486	511	Right-handed alpha
Helix 29	AD2	I	522	529	Right-handed alpha
Helix 30	AD3	I	529	552	Right-handed alpha
Helix 31	AD4	I	554	563	Right-handed alpha
Helix 32	AD5	I	563	569	Right-handed alpha
Helix 33	AD6	I	587	593	Right-handed alpha
Helix 34	AD7	I	596	624	Right-handed alpha
Helix 35	AD8	I	634	650	Right-handed alpha
Helix 36	AD9	I	688	700	Right-handed alpha
Helix 37	AE1	I	713	726	Right-handed alpha
Helix 38	AE2	I	728	736	Right-handed alpha
Helix 39	AE3	K	18	31	Right-handed alpha
Helix 40	AE4	K	31	43	Right-handed alpha
Helix 41	AE5	K	56	70	Right-handed alpha
Helix 42	AE6	K	72	77	Right-handed alpha
Helix 43	AE7	K	88	148	Right-handed alpha
Helix 44	AE8	K	154	188	Right-handed alpha
Helix 45	AE9	K	211	226	Right-handed alpha
Helix 46	AF1	K	239	249	Right-handed alpha
Helix 47	AF2	L	28	39	Right-handed alpha
Helix 48	AF3	L	60	68	Right-handed alpha
Helix 49	AF4	L	87	106	Right-handed alpha
Helix 50	AF5	L	189	204	Right-handed alpha
Helix 51	AF6	L	216	226	Right-handed alpha
Helix 52	AF7	L	257	269	Right-handed alpha
Helix 53	AF8	L	276	296	Right-handed alpha
Helix 54	AF9	L	327	344	Right-handed alpha
Helix 55	AG1	M	26	35	Right-handed alpha
Helix 56	AG2	M	75	85	Right-handed alpha
Helix 57	AG3	M	89	94	Right-handed 310
Helix 58	AG4	M	113	123	Right-handed alpha
Helix 59	AG5	M	135	154	Right-handed alpha
Helix 60	AG6	M	161	169	Right-handed alpha
Helix 61	AG7	N	2	15	Right-handed alpha
Helix 62	AG8	N	20	29	Right-handed alpha
Helix 63	AG9	N	32	37	Right-handed alpha
Helix 64	AH1	N	44	59	Right-handed alpha
Helix 65	AH2	N	62	77	Right-handed alpha
Helix 66	AH3	N	100	108	Right-handed alpha
Helix 67	AH4	N	109	114	Right-handed alpha
Helix 68	AH5	N	168	170	Right-handed 310
Helix 69	AH6	N	171	183	Right-handed alpha
Helix 70	AH7	N	197	205	Right-handed alpha
Helix 71	AH8	N	241	246	Right-handed alpha
Helix 72	AH9	N	249	256	Right-handed alpha
Helix 73	AI1	N	305	309	Right-handed 310
Helix 74	AI2	N	325	330	Right-handed alpha
Helix 75	AI3	O	92	111	Right-handed alpha
Helix 76	AI4	O	161	166	Right-handed alpha
Helix 77	AI5	O	167	172	Right-handed alpha
Helix 78	AI6	O	173	198	Right-handed alpha
Helix 79	AI7	O	262	274	Right-handed alpha
Helix 80	AI8	O	279	288	Right-handed alpha
Helix 81	AI9	P	57	62	Right-handed alpha
Helix 82	AJ1	P	62	74	Right-handed alpha
Helix 83	AJ2	P	150	161	Right-handed alpha
Helix 84	AJ3	P	162	191	Right-handed alpha
Helix 85	AJ4	P	199	203	Right-handed 310
Helix 86	AJ5	P	243	247	Right-handed 310
Helix 87	AJ6	P	257	270	Right-handed alpha
Helix 88	AJ7	P	270	281	Right-handed alpha
Helix 89	AJ8	U	250	261	Right-handed alpha
Helix 90	AJ9	U	262	267	Right-handed alpha
Helix 91	AK1	U	271	331	Right-handed alpha
Helix 92	AK2	U	331	370	Right-handed alpha
Helix 93	AK3	U	386	394	Right-handed alpha
Helix 94	AK4	U	394	399	Right-handed alpha
Helix 95	AK5	U	399	418	Right-handed alpha
Helix 96	AK6	Q	77	99	Right-handed alpha
Helix 97	AK7	Q	104	124	Right-handed alpha
Helix 98	AK8	Q	144	157	Right-handed alpha
Helix 99	AK9	Q	158	174	Right-handed alpha
Helix 100	AL1	Q	177	182	Right-handed alpha
Helix 101	AL2	Q	185	202	Right-handed alpha
Helix 102	AL3	Q	225	230	Right-handed alpha
Helix 103	AL4	Q	235	237	Right-handed 310
Helix 104	AL5	Q	238	247	Right-handed alpha
Helix 105	AL6	Q	248	268	Right-handed alpha
Helix 106	AL7	R	87	96	Right-handed alpha
Helix 107	AL8	R	96	104	Right-handed alpha
Helix 108	AL9	R	110	114	Right-handed 310
Helix 109	AM1	R	118	123	Right-handed alpha
Helix 110	AM2	R	132	149	Right-handed alpha
Helix 111	AM3	T	455	472	Right-handed alpha
Helix 112	AM4	T	476	504	Right-handed alpha
Helix 113	AM5	T	511	522	Right-handed alpha
Helix 114	AM6	T	530	539	Right-handed alpha
Helix 115	AM7	T	540	548	Right-handed alpha
Helix 116	AM8	W	18	29	Right-handed alpha
Helix 117	AM9	W	40	65	Right-handed alpha
Helix 118	AN1	W	71	80	Right-handed alpha
Helix 119	AN2	W	81	87	Right-handed alpha
Helix 120	AN3	X	2	15	Right-handed alpha

There are 11 sheets in PDB entry 7QOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	233	first strand
Strand 2	K	261	264	anti-parallel
Strand 3	K	252	254	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	48	first strand
Strand 2	L	274	275	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	123	first strand
Strand 2	L	137	143	anti-parallel
Strand 3	L	156	163	anti-parallel
Strand 4	L	183	187	anti-parallel
Strand 5	L	72	77	anti-parallel
Strand 6	L	208	210	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	123	first strand
Strand 2	L	137	143	anti-parallel
Strand 3	L	156	163	anti-parallel
Strand 4	L	183	187	anti-parallel
Strand 5	L	72	77	anti-parallel
Strand 6	L	319	322	anti-parallel
Strand 7	L	312	315	anti-parallel
Strand 8	L	303	308	anti-parallel
Strand 9	L	237	242	anti-parallel
Strand 10	L	251	256	anti-parallel
Strand 11	N	293	298	anti-parallel
Strand 12	N	266	271	anti-parallel
Strand 13	N	334	336	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	49	first strand
Strand 2	M	15	21	parallel
Strand 3	M	66	71	parallel
Strand 4	M	97	102	parallel
Strand 5	M	128	130	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	119	122	first strand
Strand 2	N	131	137	anti-parallel
Strand 3	N	150	154	anti-parallel
Strand 4	N	160	164	anti-parallel
Strand 5	N	83	89	anti-parallel
Strand 6	N	187	195	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	113	117	first strand
Strand 2	O	122	126	anti-parallel
Strand 3	O	138	142	anti-parallel
Strand 4	O	150	153	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	217	224	first strand
Strand 2	O	231	238	anti-parallel
Strand 3	O	249	254	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	77	87	first strand
Strand 2	P	99	110	anti-parallel
Strand 3	P	115	126	anti-parallel
Strand 4	P	131	137	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	195	196	first strand
Strand 2	P	205	209	anti-parallel
Strand 3	P	217	226	anti-parallel
Strand 4	P	232	241	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	509	510	first strand
Strand 2	W	34	35	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QOO