Analysis of interatomic Contacts of Structural Units in PDB entry:
7QP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QP1 entry

There are 2 chains in PDB entry 7QP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 69MET 392
B
 ARG 69MET 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7QP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 132Right-handed alpha
Helix 2
AA2
A
135 137Right-handed 310
Helix 3
AA3
A
148 152Right-handed 310
Helix 4
AA4
A
154 167Right-handed alpha
Helix 5
AA5
A
205 209Right-handed 310
Helix 6
AA6
A
214 222Right-handed alpha
Helix 7
AA7
A
339 352Right-handed alpha
Helix 8
AA8
A
356 370Right-handed alpha
Helix 9
AA9
B
116 132Right-handed alpha
Helix 10
AB1
B
135 137Right-handed 310
Helix 11
AB2
B
154 167Right-handed alpha
Helix 12
AB3
B
205 209Right-handed 310
Helix 13
AB4
B
214 222Right-handed alpha
Helix 14
AB5
B
339 351Right-handed alpha
Helix 15
AB6
B
357 370Right-handed alpha
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There are 7 sheets in PDB entry 7QP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
89 90anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
100 104parallel
Strand 3
A
174 180parallel
Strand 4
A
230 235parallel
Strand 5
A
315 321parallel
Strand 6
A
376 380anti-parallel
Strand 7
A
248 250anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
199 201anti-parallel
Strand 3
A
212 213anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
B
248 250parallel
Strand 3
B
376 380anti-parallel
Strand 4
B
315 321anti-parallel
Strand 5
B
230 235parallel
Strand 6
B
174 180parallel
Strand 7
B
100 104parallel
Strand 8
B
139 143parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
89 90anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
199 201anti-parallel
Strand 3
B
212 213anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 356first strand
Strand 2
B
389 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il