Analysis of interatomic Contacts of Structural Units in PDB entry:
7QP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QP5 entry

There are 2 chains in PDB entry 7QP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21LEU 261
B
 PRO 20LEU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7QP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
62 78Right-handed alpha
Helix 5
AA5
A
87 113Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
152 164Right-handed alpha
Helix 8
AA8
A
165 174Right-handed alpha
Helix 9
AA9
A
179 198Right-handed alpha
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
203 216Right-handed alpha
Helix 12
AB3
A
246 250Right-handed 310
Helix 13
AB4
B
24 37Right-handed alpha
Helix 14
AB5
B
38 42Right-handed 310
Helix 15
AB6
B
56 61Right-handed alpha
Helix 16
AB7
B
62 78Right-handed alpha
Helix 17
AB8
B
87 113Right-handed alpha
Helix 18
AB9
B
121 123Right-handed 310
Helix 19
AC1
B
152 164Right-handed alpha
Helix 20
AC2
B
165 174Right-handed alpha
Helix 21
AC3
B
179 198Right-handed alpha
Helix 22
AC4
B
198 203Right-handed alpha
Helix 23
AC5
B
203 216Right-handed alpha
Helix 24
AC6
B
246 250Right-handed 310
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There are 4 sheets in PDB entry 7QP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
135 140parallel
Strand 3
A
125 129anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
238 241anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
135 140parallel
Strand 3
B
125 129anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 235first strand
Strand 2
B
238 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il