Analysis of interatomic Contacts of Structural Units in PDB entry:
7QPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QPB entry

There are 6 chains in PDB entry 7QPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 741ALA 846
B
 ASN 741ALA 846
C
 ASN 741ALA 846
D
 LEU 742TYR 845
H
 GLY 5LYS 13
I
 GLY 5LYS 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7QPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
743 751Right-handed alpha
Helix 2
AA2
A
761 773Right-handed alpha
Helix 3
AA3
A
775 788Right-handed alpha
Helix 4
AA4
A
796 801Right-handed 310
Helix 5
AA5
A
831 845Right-handed alpha
Helix 6
AA6
B
743 751Right-handed alpha
Helix 7
AA7
B
761 773Right-handed alpha
Helix 8
AA8
B
775 788Right-handed alpha
Helix 9
AA9
B
796 801Right-handed 310
Helix 10
AB1
B
819 821Right-handed 310
Helix 11
AB2
B
831 846Right-handed alpha
Helix 12
AB3
C
743 751Right-handed alpha
Helix 13
AB4
C
761 773Right-handed alpha
Helix 14
AB5
C
775 788Right-handed alpha
Helix 15
AB6
C
796 801Right-handed 310
Helix 16
AB7
C
819 821Right-handed 310
Helix 17
AB8
C
831 844Right-handed alpha
Helix 18
AB9
D
743 750Right-handed alpha
Helix 19
AC1
D
761 773Right-handed alpha
Helix 20
AC2
D
775 787Right-handed alpha
Helix 21
AC3
D
796 801Right-handed 310
Helix 22
AC4
D
819 821Right-handed 310
Helix 23
AC5
D
831 844Right-handed alpha
Helix 24
AC6
H
7 14Right-handed alpha
Helix 25
AC7
I
7 14Right-handed alpha
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There are 4 sheets in PDB entry 7QPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 754first strand
Strand 2
A
803 806parallel
Strand 3
A
823 826parallel
Strand 4
A
816 818anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
752 754first strand
Strand 2
B
803 806parallel
Strand 3
B
823 826parallel
Strand 4
B
816 818anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
752 754first strand
Strand 2
C
803 805parallel
Strand 3
C
823 825parallel
Strand 4
C
816 818anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
752 754first strand
Strand 2
D
803 805parallel
Strand 3
D
823 825parallel
Strand 4
D
816 818anti-parallel
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