Analysis of interatomic Contacts of Structural Units in PDB entry:
7QPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QPE entry

There are 2 chains in PDB entry 7QPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 124ASP 598
B
 SER 124ASP 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7QPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 139Right-handed alpha
Helix 2
AA2
A
141 146Right-handed alpha
Helix 3
AA3
A
146 162Right-handed alpha
Helix 4
AA4
A
174 182Right-handed alpha
Helix 5
AA5
A
183 188Right-handed 310
Helix 6
AA6
A
202 220Right-handed alpha
Helix 7
AA7
A
235 248Right-handed alpha
Helix 8
AA8
A
278 284Right-handed alpha
Helix 9
AA9
A
299 311Right-handed alpha
Helix 10
AB1
A
327 339Right-handed alpha
Helix 11
AB2
A
349 355Right-handed alpha
Helix 12
AB3
A
360 364Right-handed 310
Helix 13
AB4
A
409 419Right-handed alpha
Helix 14
AB5
A
427 442Right-handed alpha
Helix 15
AB6
A
443 466Right-handed alpha
Helix 16
AB7
A
473 475Right-handed 310
Helix 17
AB8
A
486 489Right-handed 310
Helix 18
AB9
A
491 501Right-handed alpha
Helix 19
AC1
A
527 533Right-handed alpha
Helix 20
AC2
A
536 555Right-handed alpha
Helix 21
AC3
A
577 590Right-handed alpha
Helix 22
AC4
B
125 139Right-handed alpha
Helix 23
AC5
B
141 146Right-handed alpha
Helix 24
AC6
B
146 162Right-handed alpha
Helix 25
AC7
B
174 182Right-handed alpha
Helix 26
AC8
B
183 188Right-handed 310
Helix 27
AC9
B
202 220Right-handed alpha
Helix 28
AD1
B
235 248Right-handed alpha
Helix 29
AD2
B
278 284Right-handed alpha
Helix 30
AD3
B
299 311Right-handed alpha
Helix 31
AD4
B
327 339Right-handed alpha
Helix 32
AD5
B
349 355Right-handed alpha
Helix 33
AD6
B
360 364Right-handed 310
Helix 34
AD7
B
409 419Right-handed alpha
Helix 35
AD8
B
427 442Right-handed alpha
Helix 36
AD9
B
443 467Right-handed alpha
Helix 37
AE1
B
473 475Right-handed 310
Helix 38
AE2
B
491 502Right-handed alpha
Helix 39
AE3
B
527 533Right-handed alpha
Helix 40
AE4
B
536 555Right-handed alpha
Helix 41
AE5
B
577 590Right-handed alpha
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There are 9 sheets in PDB entry 7QPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
504 505parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
196 197anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
367 371anti-parallel
Strand 4
A
341 346parallel
Strand 5
A
314 318parallel
Strand 6
A
253 255parallel
Strand 7
A
285 286parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
480 484anti-parallel
Strand 3
A
522 526anti-parallel
Strand 4
A
507 508anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
504 505parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
196 197anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
382 387anti-parallel
Strand 3
B
367 371anti-parallel
Strand 4
B
341 346parallel
Strand 5
B
314 318parallel
Strand 6
B
253 255parallel
Strand 7
B
285 286parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
480 484anti-parallel
Strand 3
B
518 526anti-parallel
Strand 4
B
507 512anti-parallel
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