Analysis of interatomic Contacts of Structural Units in PDB entry:
7QPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QPL entry

There is 1 chain in PDB entry 7QPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9GLN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7QPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 22Right-handed 310
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
59 71Right-handed alpha
Helix 4
AA4
A
103 112Right-handed alpha
Helix 5
AA5
A
114 128Right-handed alpha
Helix 6
AA6
A
131 142Right-handed alpha
Helix 7
AA7
A
148 159Right-handed alpha
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
A
187 198Right-handed alpha
Helix 10
AB1
A
224 239Right-handed alpha
Helix 11
AB2
A
242 244Right-handed 310
Helix 12
AB3
A
252 254Right-handed 310
Helix 13
AB4
A
255 262Right-handed alpha
Helix 14
AB5
A
271 276Right-handed alpha
Helix 15
AB6
A
288 294Right-handed alpha
Helix 16
AB7
A
297 301Right-handed 310
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There are 3 sheets in PDB entry 7QPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
A
76 82anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
178 186parallel
Strand 3
A
90 94parallel
Strand 4
A
246 250parallel
Strand 5
A
264 268parallel
Strand 6
A
280 282parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
214 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il