Analysis of interatomic Contacts of Structural Units in PDB entry:
7QPR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QPR entry

There are 2 chains in PDB entry 7QPR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 697
B	MET 1	HIS 597

There are139 helices in PDB entry 7QPR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	18	Right-handed alpha
Helix 2	AA2	A	22	40	Right-handed alpha
Helix 3	AA3	A	52	65	Right-handed alpha
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	87	96	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	118	133	Right-handed alpha
Helix 8	AA8	A	133	150	Right-handed alpha
Helix 9	AA9	A	151	154	Right-handed 310
Helix 10	AB1	A	157	169	Right-handed alpha
Helix 11	AB2	A	169	177	Right-handed alpha
Helix 12	AB3	A	179	195	Right-handed alpha
Helix 13	AB4	A	195	209	Right-handed alpha
Helix 14	AB5	A	209	231	Right-handed alpha
Helix 15	AB6	A	242	251	Right-handed alpha
Helix 16	AB7	A	256	262	Right-handed alpha
Helix 17	AB8	A	272	287	Right-handed alpha
Helix 18	AB9	A	325	331	Right-handed alpha
Helix 19	AC1	A	341	344	Right-handed 310
Helix 20	AC2	A	345	352	Right-handed alpha
Helix 21	AC3	A	353	357	Right-handed 310
Helix 22	AC4	A	372	378	Right-handed alpha
Helix 23	AC5	A	398	407	Right-handed alpha
Helix 24	AC6	A	407	413	Right-handed alpha
Helix 25	AC7	A	447	453	Right-handed 310
Helix 26	AC8	A	456	468	Right-handed alpha
Helix 27	AC9	A	471	488	Right-handed alpha
Helix 28	AD1	A	489	491	Right-handed 310
Helix 29	AD2	A	493	497	Right-handed 310
Helix 30	AD3	A	498	509	Right-handed alpha
Helix 31	AD4	A	513	523	Right-handed alpha
Helix 32	AD5	A	527	536	Right-handed alpha
Helix 33	AD6	A	589	599	Right-handed alpha
Helix 34	AD7	A	629	643	Right-handed alpha
Helix 35	AD8	A	665	681	Right-handed alpha
Helix 36	AD9	B	2	18	Right-handed alpha
Helix 37	AE1	B	22	40	Right-handed alpha
Helix 38	AE2	B	52	65	Right-handed alpha
Helix 39	AE3	B	68	77	Right-handed alpha
Helix 40	AE4	B	79	85	Right-handed alpha
Helix 41	AE5	B	87	96	Right-handed alpha
Helix 42	AE6	B	96	109	Right-handed alpha
Helix 43	AE7	B	118	133	Right-handed alpha
Helix 44	AE8	B	133	150	Right-handed alpha
Helix 45	AE9	B	155	169	Right-handed alpha
Helix 46	AF1	B	169	177	Right-handed alpha
Helix 47	AF2	B	179	195	Right-handed alpha
Helix 48	AF3	B	195	209	Right-handed alpha
Helix 49	AF4	B	209	231	Right-handed alpha
Helix 50	AF5	B	242	251	Right-handed alpha
Helix 51	AF6	B	256	262	Right-handed alpha
Helix 52	AF7	B	272	287	Right-handed alpha
Helix 53	AF8	B	325	332	Right-handed alpha
Helix 54	AF9	B	345	353	Right-handed alpha
Helix 55	AG1	B	354	357	Right-handed 310
Helix 56	AG2	B	371	378	Right-handed alpha
Helix 57	AG3	B	398	407	Right-handed alpha
Helix 58	AG4	B	407	413	Right-handed alpha
Helix 59	AG5	B	447	453	Right-handed 310
Helix 60	AG6	B	456	468	Right-handed alpha
Helix 61	AG7	B	471	488	Right-handed alpha
Helix 62	AG8	B	489	491	Right-handed 310
Helix 63	AG9	B	493	497	Right-handed 310
Helix 64	AH1	B	498	509	Right-handed alpha
Helix 65	AH2	B	513	523	Right-handed alpha
Helix 66	AH3	B	527	537	Right-handed alpha
Helix 67	AH4	B	589	599	Right-handed alpha
Helix 68	AH5	B	629	643	Right-handed alpha
Helix 69	AH6	B	665	681	Right-handed alpha
Helix 70	AH7	C	2	21	Right-handed alpha
Helix 71	AH8	C	22	40	Right-handed alpha
Helix 72	AH9	C	52	65	Right-handed alpha
Helix 73	AI1	C	68	77	Right-handed alpha
Helix 74	AI2	C	87	96	Right-handed alpha
Helix 75	AI3	C	96	109	Right-handed alpha
Helix 76	AI4	C	118	133	Right-handed alpha
Helix 77	AI5	C	133	150	Right-handed alpha
Helix 78	AI6	C	151	154	Right-handed 310
Helix 79	AI7	C	155	169	Right-handed alpha
Helix 80	AI8	C	169	177	Right-handed alpha
Helix 81	AI9	C	179	195	Right-handed alpha
Helix 82	AJ1	C	195	209	Right-handed alpha
Helix 83	AJ2	C	209	231	Right-handed alpha
Helix 84	AJ3	C	242	251	Right-handed alpha
Helix 85	AJ4	C	256	262	Right-handed alpha
Helix 86	AJ5	C	272	287	Right-handed alpha
Helix 87	AJ6	C	325	335	Right-handed alpha
Helix 88	AJ7	C	341	344	Right-handed 310
Helix 89	AJ8	C	345	353	Right-handed alpha
Helix 90	AJ9	C	354	356	Right-handed 310
Helix 91	AK1	C	372	378	Right-handed alpha
Helix 92	AK2	C	398	407	Right-handed alpha
Helix 93	AK3	C	407	413	Right-handed alpha
Helix 94	AK4	C	447	453	Right-handed 310
Helix 95	AK5	C	456	468	Right-handed alpha
Helix 96	AK6	C	471	488	Right-handed alpha
Helix 97	AK7	C	489	491	Right-handed 310
Helix 98	AK8	C	493	497	Right-handed 310
Helix 99	AK9	C	498	509	Right-handed alpha
Helix 100	AL1	C	513	523	Right-handed alpha
Helix 101	AL2	C	527	536	Right-handed alpha
Helix 102	AL3	C	589	599	Right-handed alpha
Helix 103	AL4	C	629	643	Right-handed alpha
Helix 104	AL5	C	665	681	Right-handed alpha
Helix 105	AL6	D	2	21	Right-handed alpha
Helix 106	AL7	D	22	40	Right-handed alpha
Helix 107	AL8	D	52	65	Right-handed alpha
Helix 108	AL9	D	68	77	Right-handed alpha
Helix 109	AM1	D	87	95	Right-handed alpha
Helix 110	AM2	D	96	109	Right-handed alpha
Helix 111	AM3	D	118	133	Right-handed alpha
Helix 112	AM4	D	133	150	Right-handed alpha
Helix 113	AM5	D	151	154	Right-handed 310
Helix 114	AM6	D	155	169	Right-handed alpha
Helix 115	AM7	D	169	178	Right-handed alpha
Helix 116	AM8	D	179	195	Right-handed alpha
Helix 117	AM9	D	195	231	Right-handed alpha
Helix 118	AN1	D	242	251	Right-handed alpha
Helix 119	AN2	D	256	262	Right-handed alpha
Helix 120	AN3	D	272	287	Right-handed alpha
Helix 121	AN4	D	325	331	Right-handed alpha
Helix 122	AN5	D	341	344	Right-handed 310
Helix 123	AN6	D	345	353	Right-handed alpha
Helix 124	AN7	D	354	356	Right-handed 310
Helix 125	AN8	D	371	378	Right-handed alpha
Helix 126	AN9	D	398	407	Right-handed alpha
Helix 127	AO1	D	407	413	Right-handed alpha
Helix 128	AO2	D	447	453	Right-handed 310
Helix 129	AO3	D	456	468	Right-handed alpha
Helix 130	AO4	D	471	488	Right-handed alpha
Helix 131	AO5	D	489	491	Right-handed 310
Helix 132	AO6	D	493	497	Right-handed 310
Helix 133	AO7	D	498	509	Right-handed alpha
Helix 134	AO8	D	513	523	Right-handed alpha
Helix 135	AO9	D	527	537	Right-handed alpha
Helix 136	AP1	D	542	546	Right-handed 310
Helix 137	AP2	D	589	599	Right-handed alpha
Helix 138	AP3	D	629	643	Right-handed alpha
Helix 139	AP4	D	665	681	Right-handed alpha

There are 20 sheets in PDB entry 7QPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	316	324	parallel
Strand 4	A	307	313	anti-parallel
Strand 5	A	288	294	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	384	first strand
Strand 2	A	390	394	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	424	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	436	440	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	581	586	parallel
Strand 3	A	573	578	anti-parallel
Strand 4	A	603	606	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	652	first strand
Strand 2	A	657	663	anti-parallel
Strand 3	A	618	624	anti-parallel
Strand 4	A	685	688	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	263	270	anti-parallel
Strand 3	B	317	324	parallel
Strand 4	B	307	311	anti-parallel
Strand 5	B	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	384	first strand
Strand 2	B	390	394	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	424	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	436	440	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	561	first strand
Strand 2	B	581	586	parallel
Strand 3	B	573	578	anti-parallel
Strand 4	B	603	606	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	652	first strand
Strand 2	B	657	663	anti-parallel
Strand 3	B	618	625	anti-parallel
Strand 4	B	684	688	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	263	270	anti-parallel
Strand 3	C	316	324	parallel
Strand 4	C	307	313	anti-parallel
Strand 5	C	288	294	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	384	first strand
Strand 2	C	390	394	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	424	first strand
Strand 2	C	414	419	anti-parallel
Strand 3	C	436	440	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	552	first strand
Strand 2	C	603	608	anti-parallel
Strand 3	C	573	578	anti-parallel
Strand 4	C	581	586	anti-parallel
Strand 5	C	559	561	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	652	first strand
Strand 2	C	657	663	anti-parallel
Strand 3	C	618	624	anti-parallel
Strand 4	C	685	688	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	240	first strand
Strand 2	D	263	270	anti-parallel
Strand 3	D	316	324	parallel
Strand 4	D	307	313	anti-parallel
Strand 5	D	288	294	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	384	first strand
Strand 2	D	390	394	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	424	first strand
Strand 2	D	414	419	anti-parallel
Strand 3	D	436	440	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	559	561	first strand
Strand 2	D	582	586	parallel
Strand 3	D	573	577	anti-parallel
Strand 4	D	603	606	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	652	first strand
Strand 2	D	657	663	anti-parallel
Strand 3	D	618	625	anti-parallel
Strand 4	D	684	688	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QPR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QPR