Analysis of interatomic Contacts of Structural Units in PDB entry:
7QPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QPS entry

There are 2 chains in PDB entry 7QPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLY 334
B
 PRO 2ARG 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7QPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
22 40Right-handed alpha
Helix 3
AA3
A
52 65Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
96 109Right-handed alpha
Helix 7
AA7
A
119 133Right-handed alpha
Helix 8
AA8
A
133 150Right-handed alpha
Helix 9
AA9
A
155 169Right-handed alpha
Helix 10
AB1
A
169 177Right-handed alpha
Helix 11
AB2
A
179 195Right-handed alpha
Helix 12
AB3
A
195 232Right-handed alpha
Helix 13
AB4
A
242 251Right-handed alpha
Helix 14
AB5
A
256 262Right-handed alpha
Helix 15
AB6
A
272 287Right-handed alpha
Helix 16
AB7
A
325 334Right-handed alpha
Helix 17
AB8
B
3 18Right-handed alpha
Helix 18
AB9
B
22 39Right-handed alpha
Helix 19
AC1
B
53 65Right-handed alpha
Helix 20
AC2
B
68 77Right-handed alpha
Helix 21
AC3
B
96 110Right-handed alpha
Helix 22
AC4
B
121 133Right-handed alpha
Helix 23
AC5
B
133 150Right-handed alpha
Helix 24
AC6
B
155 169Right-handed alpha
Helix 25
AC7
B
169 177Right-handed alpha
Helix 26
AC8
B
179 195Right-handed alpha
Helix 27
AC9
B
195 232Right-handed alpha
Helix 28
AD1
B
242 252Right-handed alpha
Helix 29
AD2
B
256 262Right-handed alpha
Helix 30
AD3
B
272 287Right-handed alpha
Helix 31
AD4
B
325 332Right-handed alpha
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There are 2 sheets in PDB entry 7QPS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
263 270anti-parallel
Strand 3
A
317 324parallel
Strand 4
A
307 312anti-parallel
Strand 5
A
288 294anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 240first strand
Strand 2
B
263 270anti-parallel
Strand 3
B
316 324parallel
Strand 4
B
307 313anti-parallel
Strand 5
B
288 294anti-parallel
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