Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QQ6 entry

There are 4 chains in PDB entry 7QQ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 584	PRO 1004
B	SER 584	MET 1006
C	SER 584	MET 1006
D	SER 584	MET 1006

There are 44 helices in PDB entry 7QQ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	584	589	Right-handed alpha
Helix 2	AA2	A	627	641	Right-handed alpha
Helix 3	AA3	A	809	816	Right-handed alpha
Helix 4	AA4	A	817	820	Right-handed 310
Helix 5	AA5	A	821	842	Right-handed alpha
Helix 6	AA6	A	902	907	Right-handed 310
Helix 7	AA7	A	909	913	Right-handed 310
Helix 8	AA8	A	922	938	Right-handed alpha
Helix 9	AA9	A	943	955	Right-handed alpha
Helix 10	AB1	A	972	982	Right-handed alpha
Helix 11	AB2	A	991	997	Right-handed alpha
Helix 12	AB3	B	585	590	Right-handed alpha
Helix 13	AB4	B	627	641	Right-handed alpha
Helix 14	AB5	B	810	815	Right-handed alpha
Helix 15	AB6	B	821	842	Right-handed alpha
Helix 16	AB7	B	902	908	Right-handed 310
Helix 17	AB8	B	922	938	Right-handed alpha
Helix 18	AB9	B	943	955	Right-handed alpha
Helix 19	AC1	B	972	982	Right-handed alpha
Helix 20	AC2	B	985	989	Right-handed 310
Helix 21	AC3	B	991	997	Right-handed alpha
Helix 22	AC4	C	585	589	Right-handed alpha
Helix 23	AC5	C	627	641	Right-handed alpha
Helix 24	AC6	C	809	816	Right-handed alpha
Helix 25	AC7	C	817	820	Right-handed 310
Helix 26	AC8	C	821	842	Right-handed alpha
Helix 27	AC9	C	850	852	Right-handed 310
Helix 28	AD1	C	909	914	Right-handed alpha
Helix 29	AD2	C	923	938	Right-handed alpha
Helix 30	AD3	C	943	955	Right-handed alpha
Helix 31	AD4	C	972	982	Right-handed alpha
Helix 32	AD5	C	985	989	Right-handed 310
Helix 33	AD6	C	991	997	Right-handed alpha
Helix 34	AD7	D	585	589	Right-handed alpha
Helix 35	AD8	D	627	642	Right-handed alpha
Helix 36	AD9	D	809	816	Right-handed alpha
Helix 37	AE1	D	817	820	Right-handed 310
Helix 38	AE2	D	821	842	Right-handed alpha
Helix 39	AE3	D	922	938	Right-handed alpha
Helix 40	AE4	D	943	951	Right-handed alpha
Helix 41	AE5	D	951	956	Right-handed alpha
Helix 42	AE6	D	971	983	Right-handed alpha
Helix 43	AE7	D	985	989	Right-handed 310
Helix 44	AE8	D	991	998	Right-handed alpha

There are 8 sheets in PDB entry 7QQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	598	first strand
Strand 2	A	603	609	anti-parallel
Strand 3	A	615	623	anti-parallel
Strand 4	A	796	803	anti-parallel
Strand 5	A	651	658	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	862	864	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	598	first strand
Strand 2	B	603	608	anti-parallel
Strand 3	B	615	623	anti-parallel
Strand 4	B	795	803	anti-parallel
Strand 5	B	651	659	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	808	809	first strand
Strand 2	B	854	856	anti-parallel
Strand 3	B	862	864	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	598	first strand
Strand 2	C	603	609	anti-parallel
Strand 3	C	615	623	anti-parallel
Strand 4	C	795	803	anti-parallel
Strand 5	C	651	659	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	854	856	first strand
Strand 2	C	862	864	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	598	first strand
Strand 2	D	603	609	anti-parallel
Strand 3	D	615	622	anti-parallel
Strand 4	D	795	803	anti-parallel
Strand 5	D	651	659	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	854	856	first strand
Strand 2	D	862	864	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QQ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQ6