Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7QQH entry

There are 3 chains in PDB entry 7QQH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 91	ALA 713
B	LEU 88	ALA 713
C	ARG 89	PHE 100

There are 82 helices in PDB entry 7QQH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	121	123	Right-handed 310
Helix 2	AA2	A	213	217	Right-handed 310
Helix 3	AA3	A	288	301	Right-handed alpha
Helix 4	AA4	A	309	314	Right-handed 310
Helix 5	AA5	A	320	325	Right-handed alpha
Helix 6	AA6	A	326	328	Right-handed 310
Helix 7	AA7	A	329	343	Right-handed alpha
Helix 8	AA8	A	372	383	Right-handed alpha
Helix 9	AA9	A	401	409	Right-handed alpha
Helix 10	AB1	A	437	456	Right-handed alpha
Helix 11	AB2	A	466	470	Right-handed 310
Helix 12	AB3	A	484	492	Right-handed alpha
Helix 13	AB4	A	493	500	Right-handed 310
Helix 14	AB5	A	530	532	Right-handed 310
Helix 15	AB6	A	533	544	Right-handed alpha
Helix 16	AB7	A	570	582	Right-handed alpha
Helix 17	AB8	A	592	596	Right-handed 310
Helix 18	AB9	A	597	614	Right-handed alpha
Helix 19	AC1	A	614	630	Right-handed alpha
Helix 20	AC2	A	636	640	Right-handed 310
Helix 21	AC3	A	644	650	Right-handed alpha
Helix 22	AC4	B	121	123	Right-handed 310
Helix 23	AC5	B	213	217	Right-handed 310
Helix 24	AC6	B	288	301	Right-handed alpha
Helix 25	AC7	B	309	314	Right-handed 310
Helix 26	AC8	B	320	325	Right-handed alpha
Helix 27	AC9	B	326	328	Right-handed 310
Helix 28	AD1	B	329	343	Right-handed alpha
Helix 29	AD2	B	372	383	Right-handed alpha
Helix 30	AD3	B	401	409	Right-handed alpha
Helix 31	AD4	B	437	456	Right-handed alpha
Helix 32	AD5	B	466	470	Right-handed 310
Helix 33	AD6	B	484	492	Right-handed alpha
Helix 34	AD7	B	493	500	Right-handed 310
Helix 35	AD8	B	530	532	Right-handed 310
Helix 36	AD9	B	533	544	Right-handed alpha
Helix 37	AE1	B	570	582	Right-handed alpha
Helix 38	AE2	B	592	596	Right-handed 310
Helix 39	AE3	B	597	614	Right-handed alpha
Helix 40	AE4	B	614	630	Right-handed alpha
Helix 41	AE5	B	636	640	Right-handed 310
Helix 42	AE6	B	644	650	Right-handed alpha
Helix 43	AE7	C	121	123	Right-handed 310
Helix 44	AE8	C	288	301	Right-handed alpha
Helix 45	AE9	C	309	314	Right-handed 310
Helix 46	AF1	C	320	325	Right-handed alpha
Helix 47	AF2	C	326	328	Right-handed 310
Helix 48	AF3	C	329	343	Right-handed alpha
Helix 49	AF4	C	372	383	Right-handed alpha
Helix 50	AF5	C	401	409	Right-handed alpha
Helix 51	AF6	C	437	456	Right-handed alpha
Helix 52	AF7	C	466	470	Right-handed 310
Helix 53	AF8	C	484	492	Right-handed alpha
Helix 54	AF9	C	493	500	Right-handed 310
Helix 55	AG1	C	530	532	Right-handed 310
Helix 56	AG2	C	533	544	Right-handed alpha
Helix 57	AG3	C	570	582	Right-handed alpha
Helix 58	AG4	C	592	596	Right-handed 310
Helix 59	AG5	C	597	614	Right-handed alpha
Helix 60	AG6	C	614	630	Right-handed alpha
Helix 61	AG7	C	636	640	Right-handed 310
Helix 62	AG8	C	644	650	Right-handed alpha
Helix 63	AG9	D	121	123	Right-handed 310
Helix 64	AH1	D	288	301	Right-handed alpha
Helix 65	AH2	D	309	314	Right-handed 310
Helix 66	AH3	D	320	325	Right-handed alpha
Helix 67	AH4	D	326	328	Right-handed 310
Helix 68	AH5	D	329	343	Right-handed alpha
Helix 69	AH6	D	372	383	Right-handed alpha
Helix 70	AH7	D	401	409	Right-handed alpha
Helix 71	AH8	D	437	456	Right-handed alpha
Helix 72	AH9	D	466	470	Right-handed 310
Helix 73	AI1	D	484	492	Right-handed alpha
Helix 74	AI2	D	493	500	Right-handed 310
Helix 75	AI3	D	530	532	Right-handed 310
Helix 76	AI4	D	533	544	Right-handed alpha
Helix 77	AI5	D	570	582	Right-handed alpha
Helix 78	AI6	D	592	596	Right-handed 310
Helix 79	AI7	D	597	614	Right-handed alpha
Helix 80	AI8	D	614	630	Right-handed alpha
Helix 81	AI9	D	636	640	Right-handed 310
Helix 82	AJ1	D	644	650	Right-handed alpha

There are 24 sheets in PDB entry 7QQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	99	103	anti-parallel
Strand 3	A	109	115	anti-parallel
Strand 4	A	172	177	anti-parallel
Strand 5	A	255	260	anti-parallel
Strand 6	A	245	250	anti-parallel
Strand 7	A	203	208	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	142	153	anti-parallel
Strand 4	A	156	164	anti-parallel
Strand 5	A	278	285	anti-parallel
Strand 6	A	235	239	anti-parallel
Strand 7	A	225	231	anti-parallel
Strand 8	A	185	189	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	515	517	parallel
Strand 3	A	502	503	parallel
Strand 4	A	459	462	parallel
Strand 5	A	387	391	parallel
Strand 6	A	350	352	parallel
Strand 7	A	317	319	parallel
Strand 8	A	588	589	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	428	432	anti-parallel
Strand 3	A	423	425	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	635	first strand
Strand 2	A	654	656	anti-parallel
Strand 3	A	660	663	anti-parallel
Strand 4	A	708	713	anti-parallel
Strand 5	A	681	684	anti-parallel
Strand 6	A	689	690	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	677	first strand
Strand 2	A	695	701	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	93	96	anti-parallel
Strand 3	B	99	103	anti-parallel
Strand 4	B	109	115	anti-parallel
Strand 5	B	172	177	anti-parallel
Strand 6	B	255	260	anti-parallel
Strand 7	B	245	250	anti-parallel
Strand 8	B	203	208	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	142	153	anti-parallel
Strand 4	B	156	164	anti-parallel
Strand 5	B	278	285	anti-parallel
Strand 6	B	235	239	anti-parallel
Strand 7	B	225	231	anti-parallel
Strand 8	B	185	189	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	550	first strand
Strand 2	B	515	517	parallel
Strand 3	B	502	503	parallel
Strand 4	B	459	462	parallel
Strand 5	B	387	391	parallel
Strand 6	B	350	352	parallel
Strand 7	B	317	319	parallel
Strand 8	B	588	589	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	428	432	anti-parallel
Strand 3	B	423	425	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	654	656	anti-parallel
Strand 3	B	660	663	anti-parallel
Strand 4	B	708	712	anti-parallel
Strand 5	B	682	684	anti-parallel
Strand 6	B	689	690	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	677	first strand
Strand 2	B	695	701	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	99	103	anti-parallel
Strand 3	C	109	115	anti-parallel
Strand 4	C	172	177	anti-parallel
Strand 5	C	255	260	anti-parallel
Strand 6	C	245	250	anti-parallel
Strand 7	C	203	208	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	142	153	anti-parallel
Strand 4	C	156	164	anti-parallel
Strand 5	C	278	285	anti-parallel
Strand 6	C	235	239	anti-parallel
Strand 7	C	225	231	anti-parallel
Strand 8	C	185	189	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	550	first strand
Strand 2	C	515	517	parallel
Strand 3	C	502	503	parallel
Strand 4	C	459	462	parallel
Strand 5	C	387	391	parallel
Strand 6	C	350	352	parallel
Strand 7	C	317	319	parallel
Strand 8	C	588	589	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	428	432	anti-parallel
Strand 3	C	423	425	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	635	first strand
Strand 2	C	654	656	anti-parallel
Strand 3	C	660	663	anti-parallel
Strand 4	C	708	713	anti-parallel
Strand 5	C	681	684	anti-parallel
Strand 6	C	689	690	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	672	677	first strand
Strand 2	C	695	701	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	93	96	anti-parallel
Strand 3	D	99	103	anti-parallel
Strand 4	D	109	115	anti-parallel
Strand 5	D	172	177	anti-parallel
Strand 6	D	255	260	anti-parallel
Strand 7	D	245	250	anti-parallel
Strand 8	D	203	208	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	142	153	anti-parallel
Strand 4	D	156	164	anti-parallel
Strand 5	D	278	285	anti-parallel
Strand 6	D	235	239	anti-parallel
Strand 7	D	225	231	anti-parallel
Strand 8	D	185	189	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	549	550	first strand
Strand 2	D	515	517	parallel
Strand 3	D	502	503	parallel
Strand 4	D	459	462	parallel
Strand 5	D	387	391	parallel
Strand 6	D	350	352	parallel
Strand 7	D	317	319	parallel
Strand 8	D	588	589	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	428	432	anti-parallel
Strand 3	D	423	425	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	635	first strand
Strand 2	D	654	656	anti-parallel
Strand 3	D	660	663	anti-parallel
Strand 4	D	708	712	anti-parallel
Strand 5	D	682	684	anti-parallel
Strand 6	D	689	690	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	672	677	first strand
Strand 2	D	695	701	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7QQH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQH