Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QQI entry

There is 1 chain in PDB entry 7QQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2TYR 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7QQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
68 76Right-handed alpha
Helix 4
AA4
A
94 104Right-handed alpha
Helix 5
AA5
A
105 107Right-handed 310
Helix 6
AA6
A
115 120Right-handed alpha
Helix 7
AA7
A
121 124Right-handed 310
Helix 8
AA8
A
126 133Right-handed alpha
Helix 9
AA9
A
170 187Right-handed alpha
Helix 10
AB1
A
196 200Right-handed 310
Helix 11
AB2
A
213 228Right-handed alpha
Helix 12
AB3
A
241 249Right-handed alpha
Helix 13
AB4
A
258 270Right-handed alpha
Helix 14
AB5
A
272 282Right-handed alpha
Helix 15
AB6
A
298 302Right-handed 310
Helix 16
AB7
A
306 321Right-handed alpha
Helix 17
AB8
A
325 334Right-handed 310
Helix 18
AB9
A
344 349Right-handed alpha
Helix 19
AC1
A
352 366Right-handed alpha
Helix 20
AC2
A
374 378Right-handed alpha
Helix 21
AC3
A
383 391Right-handed alpha
Helix 22
AC4
A
392 398Right-handed 310
Helix 23
AC5
A
402 410Right-handed alpha
Helix 24
AC6
A
412 428Right-handed alpha
Helix 25
AC7
A
429 432Right-handed 310
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There are 4 sheets in PDB entry 7QQI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
191 194parallel
Strand 3
A
80 85parallel
Strand 4
A
39 42parallel
Strand 5
A
10 13parallel
Strand 6
A
369 373parallel
Strand 7
A
286 288parallel
Strand 8
A
254 256parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
163 165anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
152 156anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 442first strand
Strand 2
A
445 452anti-parallel
Strand 3
A
455 462anti-parallel
Strand 4
A
467 472anti-parallel
Strand 5
A
477 480anti-parallel
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