Analysis of interatomic Contacts of Structural Units in PDB entry:
7QQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7QQJ entry

There are 2 chains in PDB entry 7QQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 474
B
 MET 1HIS 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 7QQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
66 77Right-handed alpha
Helix 5
AA5
A
92 102Right-handed alpha
Helix 6
AA6
A
103 105Right-handed 310
Helix 7
AA7
A
107 111Right-handed 310
Helix 8
AA8
A
113 118Right-handed alpha
Helix 9
AA9
A
124 131Right-handed alpha
Helix 10
AB1
A
168 185Right-handed alpha
Helix 11
AB2
A
194 198Right-handed 310
Helix 12
AB3
A
211 226Right-handed alpha
Helix 13
AB4
A
238 248Right-handed alpha
Helix 14
AB5
A
256 268Right-handed alpha
Helix 15
AB6
A
270 280Right-handed alpha
Helix 16
AB7
A
297 300Right-handed 310
Helix 17
AB8
A
304 319Right-handed alpha
Helix 18
AB9
A
323 332Right-handed 310
Helix 19
AC1
A
342 347Right-handed alpha
Helix 20
AC2
A
350 364Right-handed alpha
Helix 21
AC3
A
372 376Right-handed alpha
Helix 22
AC4
A
381 389Right-handed alpha
Helix 23
AC5
A
390 396Right-handed 310
Helix 24
AC6
A
400 408Right-handed alpha
Helix 25
AC7
A
410 426Right-handed alpha
Helix 26
AC8
A
427 431Right-handed 310
Helix 27
AC9
B
19 31Right-handed alpha
Helix 28
AD1
B
48 52Right-handed 310
Helix 29
AD2
B
61 65Right-handed 310
Helix 30
AD3
B
66 74Right-handed alpha
Helix 31
AD4
B
92 102Right-handed alpha
Helix 32
AD5
B
103 105Right-handed 310
Helix 33
AD6
B
107 111Right-handed 310
Helix 34
AD7
B
113 118Right-handed alpha
Helix 35
AD8
B
124 131Right-handed alpha
Helix 36
AD9
B
168 184Right-handed alpha
Helix 37
AE1
B
194 198Right-handed 310
Helix 38
AE2
B
211 226Right-handed alpha
Helix 39
AE3
B
238 248Right-handed alpha
Helix 40
AE4
B
256 268Right-handed alpha
Helix 41
AE5
B
270 280Right-handed alpha
Helix 42
AE6
B
297 300Right-handed 310
Helix 43
AE7
B
304 319Right-handed alpha
Helix 44
AE8
B
323 332Right-handed 310
Helix 45
AE9
B
342 347Right-handed alpha
Helix 46
AF1
B
350 364Right-handed alpha
Helix 47
AF2
B
372 376Right-handed alpha
Helix 48
AF3
B
381 389Right-handed alpha
Helix 49
AF4
B
390 396Right-handed 310
Helix 50
AF5
B
400 408Right-handed alpha
Helix 51
AF6
B
410 426Right-handed alpha
Helix 52
AF7
B
427 431Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7QQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
189 193parallel
Strand 3
A
78 84parallel
Strand 4
A
37 40parallel
Strand 5
A
8 11parallel
Strand 6
A
367 371parallel
Strand 7
A
284 286parallel
Strand 8
A
252 254parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
150 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
338 339anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 438first strand
Strand 2
A
442 449anti-parallel
Strand 3
A
452 459anti-parallel
Strand 4
A
465 471anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
189 193parallel
Strand 3
B
78 84parallel
Strand 4
B
37 40parallel
Strand 5
B
8 11parallel
Strand 6
B
367 371parallel
Strand 7
B
284 286parallel
Strand 8
B
252 254parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
150 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 295first strand
Strand 2
B
338 339anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 438first strand
Strand 2
B
442 449anti-parallel
Strand 3
B
452 459anti-parallel
Strand 4
B
465 471anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il